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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttcatttccataaaatcattgacttcatgttttttccagaaacatttataaatctttttgaggaatttgatgcagGGGAGAGCTGGACTATCTTGTTATCGACATGCCTCCTGGAACTGGTGATATACAACTGACCTTATGCCAG

Basic information

species Arabidopsis thaliana
transcript AT3G24430.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G24430.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA07G09820.1 (Glycine max), 3'ss of exon 7
-------------------gtttgttcatttccataaa--atcattgacttcatgttttttccagaaacatttataaatctttttgaggaatttgatgcagGGGAGAGCTGGACTATCTTGTTATCGACATGCCTCCTGGAACTGGTGATATACAACTGACCTTATGCCAG
                    |||  || | |||| |||  ||  ||||        |   | | |    |||||||   ||  ||    | |   ||| ||||| |||||||| || ||  |||| |||||||||||||||||||| ||||| ||||| || |||||||||
attcatatagtaatctatactttagtcctctccaaaaattatatttgaagatcaaatgggttctgcttgatttatagtcctgattttcta-tgcaatgtagGGGTGAGCTGGATTACCTCATTATTGACATGCCTCCTGGAACTGGAGATATTCAACTCACATTATGCCAG

upper sequence: AT3G24430.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA09G31980.1 (Glycine max), 3'ss of exon 7
--------------------gtttgttcatttccataaaatc-attgacttcatgttttttccagaaacatttataaatctttttgaggaatttgatgcagGGGAGAGCTGGACTATCTTGTTATCGACATGCCTCCTGGAACTGGTGATATACAACTGACCTTATGCCAG
                     |||  || | |||| ||| |  |||||        |   | | |    |||||||   ||  ||  |  ||   ||| ||||| |||||||| || ||  |||| |||||||||||||||||||| ||||| ||||| || |||||||||
aattcatatagtaatctatactttagtcctctccaaaaattagattgaagatcaaatgggttctgcttgatttatagtcctgattt-gctatacaatgtagGGGTGAGCTGGATTACCTCATTATTGACATGCCTCCTGGAACTGGAGATATTCAACTCACATTATGCCAG

upper sequence: AT3G24430.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: Vv11s0016g04250.t01 (Vitis vinifera), 3'ss of exon 6
-gtttgttcatttccata-aaatcattg--acttcatgttttttccaga----------aacatttataaatctt---tttgaggaatttga---tgcagGGGAGAGCTGGACTATCTTGTTATCGACATGCCTCCTGGAACTGGTGATATACAACTGACCTTATGCCAG
  ||  |  || |   |  |  |||| |  ||||  |    |||  | |            ||| |  |  |  |     |||    ||  |   |||||||||||||||||||| |||||||| |||||||| ||||||||||||||||| ||||| || || ||||||
tattcatctatctttgtttaggtcatcgccacttagtaccattttgaaattttggatgggtcatctgcaggttctgatcctgattgtttcaactatgcagGGGAGAGCTGGACTACCTTGTTATTGACATGCCCCCTGGAACTGGTGATATTCAACTTACTTTGTGCCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gacttcatgttttttccagaaacatttataaatctttttgaggaatttgatgcagGGGAGAGCTGGACTATCTTGTTATCGACATGCCTCCTGGAACTGGTGATATACAACTGACCTTATGCCAG
                 agaaacatttataaat  TA-rich tract