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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactttgtgattcaaatcttccaaaagctaacaaaatcatgcagtttcatgagtttcttctatcctctgtctgtggaccatttcataacagttttaatatttgtttgttacaacagCTCGCTGGTGAAAACTCTCATCACATAATAGAGGCGACGTTTAAGGCGTTTGCCAGAGCTCTACGACAAGCAACAGAGACTGATCCACGCCGTGGTGGGA

Basic information

species Arabidopsis thaliana
transcript AT3G22425.2
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164027385|gb|ES139076.1|ES139076
EST:     CTGGTATGACTCTTCACATCCGGCAG                         CTCGCTGGTGAAAACTCTCATCACATAATAGAGGCGACGTTTAAGGCGTTT
genomic: CTGGTATGACTCTTCACATCCGGCAGgtactttgtg ... gttacaacagCTCGCTGGTGAAAACTCTCATCACATAATAGAGGCGACGTTTAAGGCGTTT
EST: gi|164088258|gb|ES132431.1|ES132431
EST:     TTTTCCAGTCGTTGGTGAATACTTCTGGTATGACTCTTCACATCCGGCAG                         CTCGCTGGTGAAAACTCTCATCACATAATAGAGGCG
genomic: TTTTCCAGTCGTTGGTGAATACTTCTGGTATGACTCTTCACATCCGGCAGgtactttgtg ... gttacaacagCTCGCTGGTGAAAACTCTCATCACATAATAGAGGCG
EST: gi|164149898|gb|ES137392.1|ES137392
EST:     TTTTCCAGTCGTTGGTGAATACTTCTGGTATGACTCTTCACATCCGGCAG                         CTCGCTGGTGAAA-CTCTCATCACATAATAGAGGCG
genomic: TTTTCCAGTCGTTGGTGAATACTTCTGGTATGACTCTTCACATCCGGCAGgtactttgtg ... gttacaacagCTCGCTGGTGAAAACTCTCATCACATAATAGAGGCG
EST: gi|86080767|gb|DR376524.1|DR376524
EST:     TTTTCCAGTCATTGGTGAATACTTCTGGTATGACTCTTCACATCCGGCAG                         CTCGCTGGTGAAAACTCTCATCACATAATAGAGGCGACGTTTAAGGCGTTT
genomic: TTTTCCAGTCGTTGGTGAATACTTCTGGTATGACTCTTCACATCCGGCAGgtactttgtg ... gttacaacagCTCGCTGGTGAAAACTCTCATCACATAATAGAGGCGACGTTTAAGGCGTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcctctgtctgtggaccatttcataacagttttaatatttgtttgttacaacagCTCGCTGGTGAAAACTCTCATCACATAATAGAGGCGACGTTTAAGGCGTTTGCCAGAGCTCTACGACAAGCAACAGAGACTGATCCACGCCGTGGTGGGA
                  atttcataacagtttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtactttgtgattcaaatcttccaaaagctaacaaaatcatgcagtttcatgagtttcttctatcctctgtctgtggaccatttcataacagttttaatatttgtttgttacaacagCTCGCTGGTGAAAACTCTCATCACATAATAGAGGCGACGTTTAAGGCGTTTGCCAGAGCTCTACGACAAGCAACAGAGACTGATCCACGCCGTGGTGGGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGTGG