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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtttttgttcacataatgcttaataatatttttttgcttcttttacttatacttgttagttctcatcgttaatttccaaacttctcattataagatttgggagtataaagttctctctcatgtcttataccaacttttgttcttgatgcagGTGTTACAAAAAAAATATCCTCAGTTTGCTCAGTTGCATAACGGAAATCACATGCAACAG

Basic information

species Arabidopsis thaliana
transcript AT3G21280.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86069923|gb|DR365680.1|DR365680
EST:     GTGAGCTTGATAAAAGTGTCAAGGCTGTTGCGCCTATGCCGTTCTGGATG                         GTGTTACNNNNNNN-TATCCTCAGTTTGCTCAGTTGCATAACGGAAATCAC
genomic: GTGAGCTTGATAAAAGTGTCAAGGCTGTTGCGCCTATGCCGTTCTGGATGgttagttttt ... cttgatgcagGTGTTACAAAAAAAATATCCTCAGTTTGCTCAGTTGCATAACGGAAATCAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgggagtataaagttctctctcatgtcttataccaacttttgttcttgatgcagGTGTTACAAAAAAAATATCCTCAGTTTGCTCAGTTGCATAACGGAAATCACATGCAACAG
                                            tcttgat  putative branch site (score: 4)
                                     cttttgttctt  CT-rich tract
       tataaagtt  TA-rich tract