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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaggattaaaaaacatgaaaaacagaaaatttcagggagcatgcatgcattctaacaatatatctctatactatttgataacctgtgtcatctacgtattaatatcaatatttgcttgttggattctacttcacagGGCATGCGAGTTGGTGTTAATCTGGCTTTGGCCATCGCTTTACACAACATTCCCGAG

Basic information

species Arabidopsis thaliana
transcript AT3G20870.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86083065|gb|DR378824.1|DR378824
EST:     GATCAATAAA-                         GGCATGCGAGTTGGTGTTAATCT-GCTTTGGCCATCGCTTTACACAACATT
genomic: GATCAATAAAGgtgaggatta ... tacttcacagGGCATGCGAGTTGGTGTTAATCTGGCTTTGGCCATCGCTTTACACAACATT
EST: gi|116403229|gb|EG445821.1|EG445821
EST:     GTATTTCTCGGATCAATAAAG                         GGCATGCGAATTGGTGTTAATCTGGCTTTGGCCATCGCTTTACACAACATT
genomic: GTATTTCTCGGATCAATAAAGgtgaggatta ... tacttcacagGGCATGCGAGTTGGTGTTAATCTGGCTTTGGCCATCGCTTTACACAACATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctgtgtcatctacgtattaatatcaatatttgcttgttggattctacttcacagGGCATGCGAGTTGGTGTTAATCTGGCTTTGGCCATCGCTTTACACAACATTCCCGAG
               tattaat  putative branch site (score: 2)
                                          ttctacttc  putative PPT
           tacgtattaatatcaa  TA-rich tract