1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tccatagaaccagttctgcgccaatgaaatggtgtctacattgaaactcattgaaagtgtgcaaccccttgcttacgtattaacataatgttaatgacagGTGGCAACATTTATTGTTCAAAAGATACTGTTGGATGATGTGGGGATGGATTACATCTGCACAACAGCAGAGCGGTTTTTTGCAGTTGGTCGAGTGTTGG
species | Arabidopsis thaliana |
transcript | AT3G20800.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTCCTCTGTGCCTCCGTACCATGGAAATGGGGAGTGAGCTGTCAAAAACA GTGGCAACATTTATTGTTCAAAAGAATAACTGTTGGATGATGTGGGGATGGEST: gi|164236673|gb|ES111604.1|ES111604
genomic: TTCCTCTGTGCCTCCGTACCATGGAAATGGGGAGTGAGCTGTCAAAAACAgtaagtcttt ... ttaatgacagGTGGCAACATTTATTGTTCAAAAGA-TA-CTGTTGGATGATGTGGGGATGG
EST: GGGAGTGAGCTGTCAAAAACA GTGGCAACATTTATTGTTCAAAAGATACTGTTGGATGATGTGGGGATGGATEST: gi|86084780|gb|DR380539.1|DR380539
genomic: GGGAGTGAGCTGTCAAAAACAgtaagtcttt ... ttaatgacagGTGGCAACATTTATTGTTCAAAAGATACTGTTGGATGATGTGGGGATGGAT
EST: GTGAGCTGTCAAAAACA GTGGCAACATTTATTGTTCAAAAGATACTGTTGGATGATGTGGGGATGGAT
genomic: GTGAGCTGTCAAAAACAgtaagtcttt ... ttaatgacagGTGGCAACATTTATTGTTCAAAAGATACTGTTGGATGATGTGGGGATGGAT
actcattgaaagtgtgcaaccccttgcttacgtattaacataatgttaatgacagGTGGCAACATTTATTGTTCAAAAGATACTGTTGGATGATGTGGGGATGGATTACATCTGCACAACAGCAGAGCGGTTTTTTGCAGTTGGTCGAGTGTTGG
tattaacataatgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccatagaaccagttctgcgccaatgaaatggtgtctacattgaaactcattgaaagtgtgcaaccccttgcttacgtattaacataatgttaatgacagGTGGCAACATTTATTGTTCAAAAGATACTGTTGGATGATGTGGGGATGGATTACATCTGCACAACAGCAGAGCGGTTTTTTGCAGTTGGTCGAGTGTTGG
- - -agaacca
- - - - - - - -ctgcgcc
- - - - - - - - - - - aatgaaa
- - - - - - - - - - - - - - - - - - - - - -aaactca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacataa