1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtacactaatctcttactgtttttgcttcactaaacttgtttggattgattaagctctgaacaatggcaaaatgtatcttcttcctttttcgcacgtatccatcgggtaatcgtaatccttacaaaagttgaatgtgatgcagATATTAGAGTATCATCCTCAGATGCTGCAAGAATATCTTCGAGGTGGAGAACAGACTAGCTTCATGTACCCAAG
species | Arabidopsis thaliana |
transcript | AT3G18040.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGTGAGAGAATTGATCTACAGAGAG ATATTAGAGTATCATCCTCAGATGCTGCAAGAATATCTTCGAGGTGGAGAAEST: gi|164110904|gb|EL980671.1|EL980671
genomic: TGTGAGAGAATTGATCTACAGAGAGgtacactaat ... tgtgatgcagATATTAGAGTATCATCCTCAGATGCTGCAAGAATATCTTCGAGGTGGAGAA
EST: GGAAGATAACAAAAGAAGATGTGAGAGAATTGATCTACAGAGAG ATATTAGAGTATCATCCTCAGATGCTGCAAGAATATCTTCGAGGEST: gi|164097622|gb|ES030707.1|ES030707
genomic: GGAAGATAACAAAAGAAGATGTGAGAGAATTGATCTACAGAGAGgtacactaat ... tgtgatgcagATATTAGAGTATCATCCTCAGATGCTGCAAGAATATCTTCGAGG
EST: ACAAAAGAAGATGTGAGAGAATTGATCTACAGAGAG ATATTAGAGTATCATCCTCAGATGCTGCAAGAATATCTTCGAGGEST: gi|164168923|gb|EL989333.1|EL989333
genomic: ACAAAAGAAGATGTGAGAGAATTGATCTACAGAGAGgtacactaat ... tgtgatgcagATATTAGAGTATCATCCTCAGATGCTGCAAGAATATCTTCGAGG
EST: GGAAGAT-ACAAAAGAAGATGTGAGAGAATTGATCTACAGAGAG ATATTAGAGTATCATCCTCAGATGCTGCAAGAATATCTTCGAGG
genomic: GGAAGATAACAAAAGAAGATGTGAGAGAATTGATCTACAGAGAGgtacactaat ... tgtgatgcagATATTAGAGTATCATCCTCAGATGCTGCAAGAATATCTTCGAGG
ttcgcacgtatccatcgggtaatcgtaatccttacaaaagttgaatgtgatgcagATATTAGAGTATCATCCTCAGATGCTGCAAGAATATCTTCGAGGTGGAGAACAGACTAGCTTCATGTACCCAAG
tccttac putative branch site (score: 2)
ttacaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacactaatctcttactgtttttgcttcactaaacttgtttggattgattaagctctgaacaatggcaaaatgtatcttcttcctttttcgcacgtatccatcgggtaatcgtaatccttacaaaagttgaatgtgatgcagATATTAGAGTATCATCCTCAGATGCTGCAAGAATATCTTCGAGGTGGAGAACAGACTAGCTTCATGTACCCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA