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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttaactttctctgttcatcaaccactcctaatcatgctaactccgtgagccgcaagtcacacgatgacaactttttttttcttaaaacaaaaatagGAGAGATGATAGTAGGACCAACAAAGACATTGTTCATGGATGAGATATCGACAGGTCTAGACAGTTCAACAACGTACCAAATAGTGAAATGCCTTCAAGA

Basic information

species Arabidopsis thaliana
transcript AT3G16340.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G16340.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA15G02220.1 (Glycine max), 3'ss of exon 7
-----gtttaactttctctgttcatcaaccactcctaatcatgctaactccgtgagccgcaagtca-cacgatgacaactttttttttcttaaaacaaaaatagGAGAGATGATAGTAGGACCAACAAAGACATTGTTCATGGATGAGATATCGACAGGTCTAGACAGTTCAACAACGTACCAAATAGTGAAATGCCTTCAAGA
      | ||   | |  ||    | ||    |  |     || || |    |          |   |||||  |    |||   |||  |     |     ||| || ||||| || ||||| ||||| ||||| ||||||||||| ||||| || ||||| || || || ||||| || ||||||||||||||| | ||| |
cagtgatatacaatgcaatgaattttaaatgattttttcagtgatatcattttagttttttgcttggcacgactagggttttgacttttgtttgcta----cagGGGAAATGATCGTTGGACCTACAAAAACATTATTCATGGATGAAATATCAACGGGTCTTGATAGCTCCACAACATATCAAATAGTGAAATGCTTCCAACA

upper sequence: AT3G16340.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA08G21540.2 (Glycine max), 3'ss of exon 7
--gtttaactttctctgttcatcaaccactcctaatca--tgc-taactccgtgagccgcaag----tcacacgatgacaactttttttttcttaaaacaaaaatagGAGAGATGATAGTAGGACCAACAAAGACATTGTTCATGGATGAGATATCGACAGGTCTAGACAGTTCAACAACGTACCAAATAGTGAAATGCCTTCAAGA
  || ||||   ||  | | || |    |     ||||  ||| ||| |     |     |      ||  || | ||||   ||||  || ||| |        |||||||||||| ||||| || ||||| ||| | ||||||||||| ||||| || ||||| || || |||||||| || || || ||||| ||| | ||  |
acgtataaccaacttagattatgacaatccaaggatcaaatgcataattatccaaattatattgatttcttacaacgacatggttttgatttttata-------cagGAGAGATGATTGTAGGGCCCACAAAAACACTATTCATGGATGAAATATCAACGGGTCTTGATAGCTCAACAACATATCAGATTGTGAAGTGCTTGCAGCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccgtgagccgcaagtcacacgatgacaactttttttttcttaaaacaaaaatagGAGAGATGATAGTAGGACCAACAAAGACATTGTTCATGGATGAGATATCGACAGGTCTAGACAGTTCAACAACGTACCAAATAGTGAAATGCCTTCAAGA
                         acaactttttttttct  TA-rich tract