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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacttatactattgagatttgctttggctagctctttcaaaatacattaccttcggaaaacatcaggctagttttaggtttttaattgattttcacattcctttttcaagGTGGAGTTTTTGCCCAAATTTAGTGTTAGTGGAATCTGGCGTAGATGGCGTGAATCATATCCGGTGAATGATGAAAAAACCAACGACTCCATAACTGTAT

Basic information

species Arabidopsis thaliana
transcript AT3G16170.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G16170.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA08G21840.1 (Glycine max), 3'ss of exon 7
------------------------------gtaacttatactattgagatttgctttggctagctctt---tcaaaatacattaccttcggaaaacatcaggctagttttaggtttttaattg-------attttcacattcctttttcaagGTGGAGTTTTTGCCCAAATTTAGTGTTAGTGGAATCTGGCGTAGATGGCGTGAATCATATCCGGTGAATGATGAAAAAACCAACGACTCCATAACTGTAT
                                ||  || |  | | | |   |        |  ||||   |     |  | |  | ||  || | |         |||||  | |||  |||          || |  |  ||| || ||||| ||||||||||| ||||||||||| || ||| | ||||  ||||||||||| ||||||||     ||| |   ||  |  | ||  | |||||||| |
gtaatatattatcttcacttctgcttgcgaagaaaatacaaaactaaaaaaagagaaaaagaaatcttaacttttgttctagtggcctctaaatagacagtatccattttaaatatttttttgtggctaagaatttaattgtcttgttgaagGTTGAGTTTTTGCCAAAATTTAGTGTGAGAGGAGTTTGGCAGAGATGGCGTGAGTCATATCCAACTGATGGTTCTAAGGCTGAAGATGCTATAACTGTGT

upper sequence: AT3G16170.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA07G02180.2 (Glycine max), 3'ss of exon 7
---------------------------------------gtaacttatactattgagatttgctttggctagctctttcaaaatacattaccttcggaaaacatcaggctagttttaggtttttaattgattttcacattcctttttcaagGTGGAGTTTTTGCCCAAATTTAGTGTTAGTGGAATCTGGCGTAGATGGCGTGAATCATATCCGGTGAATGATGAAAAAACCAACGACTCCATAACTGTAT
                                         |||| | |  |  || |     | |   ||  | | |   | |    |       || |  |||    ||  |||   ||| |  |     || |  |  ||| || ||||| ||||||||||| ||||||||||| || ||| | ||||  ||||||||||| ||||||||     ||| |   ||  |  | ||  | |||||||| |
gtaatatattctcttcacttctgcttgtgaagaaaatacaaaactaaaaaaaaagaaaagaaatct--ttacttttgttctagtggcctctaaatagacagtatctatttaactttt--tttgtgctaagaatttaattgtcttgttgaagGTTGAGTTTTTGCCAAAATTTAGTGTGAGAGGAGTTTGGCAGAGATGGCGTGAGTCATATCCAACCGATGGTTCTAAGGCTGAAGAGGCTATAACTGTGT

upper sequence: AT3G16170.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: Vv09s0002g04170.t01 (Vitis vinifera), 3'ss of exon 7
gtaacttatactattgagatttgctttggctagctctttcaaaatacattaccttcggaaaacatcaggctagttttaggtttttaattgattttcacattccttt-ttcaagGTGGAGTTTTTGCCCAAATTTAGTGTTAGTGGAATCTGGCGTAGATGGCGTGAATCATATCCGGTGAATGATGAAAAAACCAACGACTCCATAACTGTAT
             |     |||  | | | | |||| || |   ||||   | |    |  |    | | |   ||||  | |||  |||   |  |  |   ||| || ||||| |||||| ||||||| || ||||| || ||||||||||  ||||||||||||||| ||||     |||     ||     | ||  | ||||| || |
-------------tcattttttcatctagattgctcatttactctacaaggcttgttcactaatctaagttcagtttaattatttggttgtaatatatttatttttattgaagGTTGAGTTTATGCCCAAGTTCAGTGTGAGAGGAATCTGGCAGAGATGGCGTGAATCACATCCTAAAGATGGAACTAAGGTTGATGATGCTATAACCGTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaaacatcaggctagttttaggtttttaattgattttcacattcctttttcaagGTGGAGTTTTTGCCCAAATTTAGTGTTAGTGGAATCTGGCGTAGATGGCGTGAATCATATCCGGTGAATGATGAAAAAACCAACGACTCCATAACTGTAT
                                  ttttcacattcctttt  CT-rich tract
                ttttaggtttttaatt  TA-rich tract