1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' |
gtgtgtaagaggtccaagcactgagcttttatggcttagttagcacgaggtacttttaaaagggttttcttagactaattttcatgcttgttcatattcagATATGGAATCTTGGTTCCCCAGACCCAAATTTTACACTGGATGCTCATCAGAAAGGAGTCAACTGTGTAGATTATTTCACAGGGGGTGATAAACCCTATC
species | Arabidopsis thaliana |
transcript | AT3G15980.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CAAAAGATACCAACACTTTTGCCAGTGCTTCGCTTGATCGTACCATAAAG ATATGGAATCTTGGTTCCCCAGACCCAAATTTTACACTGGATGCTCATCAGEST: gi|116458895|gb|EG501487.1|EG501487
genomic: CAAAAGATACCAACACTTTTGCCAGTGCTTCGCTTGATCGTACCATAAAGgtgtgtaaga ... tcatattcagATATGGAATCTTGGTTCCCCAGACCCAAATTTTACACTGGATGCTCATCAG
EST: CAAAAGATACCAACACTTTTGCCAGTGCTTCGCTTGATCGTACCATAAAG ATATGGAATCTTGGTTEST: gi|116382435|gb|EG425027.1|EG425027
genomic: CAAAAGATACCAACACTTTTGCCAGTGCTTCGCTTGATCGTACCATAAAGgtgtgtaaga ... tcatattcagATATGGAATCTTGGTT
EST: CAAAAGATACCAACACTTTTGCCAGTGCTTCGCTTGATCGTACCATAAAG ATATGGAATCTTGGTTCCEST: gi|116382437|gb|EG425029.1|EG425029
genomic: CAAAAGATACCAACACTTTTGCCAGTGCTTCGCTTGATCGTACCATAAAGgtgtgtaaga ... tcatattcagATATGGAATCTTGGTTCC
EST: CAGAAGATACCAACACTTTTGCCAGTGCTTCGCTTGATCGTACCATAAAG ATATGGAATCTTGGTTCCCCAGACCCAAATTTTACACTGGATGCTCATCAGEST: gi|116382434|gb|EG425026.1|EG425026
genomic: CAAAAGATACCAACACTTTTGCCAGTGCTTCGCTTGATCGTACCATAAAGgtgtgtaaga ... tcatattcagATATGGAATCTTGGTTCCCCAGACCCAAATTTTACACTGGATGCTCATCAG
EST: CAAAAGATACCAACACTTTTGCCAGTGCTTCGCTTGATCGTACCATAAAG ATATGGAATCTTGGTTCCCCAGACCCAAATTTTACACTGGATGCTCATCAG
genomic: CAAAAGATACCAACACTTTTGCCAGTGCTTCGCTTGATCGTACCATAAAGgtgtgtaaga ... tcatattcagATATGGAATCTTGGTTCCCCAGACCCAAATTTTACACTGGATGCTCATCAG
gaggtacttttaaaagggttttcttagactaattttcatgcttgttcatattcagATATGGAATCTTGGTTCCCCAGACCCAAATTTTACACTGGATGCTCATCAGAAAGGAGTCAACTGTGTAGATTATTTCACAGGGGGTGATAAACCCTATC
gactaat putative branch site (score: 2)
cttgttc putative PPT
acttttaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgtaagaggtccaagcactgagcttttatggcttagttagcacgaggtacttttaaaagggttttcttagactaattttcatgcttgttcatattcagATATGGAATCTTGGTTCCCCAGACCCAAATTTTACACTGGATGCTCATCAGAAAGGAGTCAACTGTGTAGATTATTTCACAGGGGGTGATAAACCCTATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG