1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagacaaaacttctcacatacaaattggctaacaagaaaaaaatttgcttctcatacagtgtgctctgtgttcacacacagCTATTGCCGGTGTAGCGGCTTATAACAACCATAAGCTGAAGAAGGAAGCATCCAAAGTTGTTACCACAGAAACTCCAGGAGATGCTGAATCAATACCGTT
species | Arabidopsis thaliana |
transcript | AT3G14410.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CATCAATCTTTTCGGTTACGCCATCG CTATTGCCGGTGTAGCGGCTTATAACAACCATAAGCTGAAGAAGGAAGCAT
genomic: CATCAATCTTTTCGGTTACGCCATCGgtaagacaaa ... tcacacacagCTATTGCCGGTGTAGCGGCTTATAACAACCATAAGCTGAAGAAGGAAGCAT
ggctaacaagaaaaaaatttgcttctcatacagtgtgctctgtgttcacacacagCTATTGCCGGTGTAGCGGCTTATAACAACCATAAGCTGAAGAAGGAAGCATCCAAAGTTGTTACCACAGAAACTCCAGGAGATGCTGAATCAATACCGTT
ggctaac putative branch site (score: 2)
acaagaaaaaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagacaaaacttctcacatacaaattggctaacaagaaaaaaatttgcttctcatacagtgtgctctgtgttcacacacagCTATTGCCGGTGTAGCGGCTTATAACAACCATAAGCTGAAGAAGGAAGCATCCAAAGTTGTTACCACAGAAACTCCAGGAGATGCTGAATCAATACCGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG