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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatgacttacacttagccttcttttgctttactttttgggttgctaaacattttccggaatttgatgatccagGAGAGTGAAATCAAATGGGCTTCTCGGTGGGACACGTACCTTCTCATGAACGATGATCAAATCCACTGGTTTTCCATCATAAATTCACTTATGATTGTCC

Basic information

species Arabidopsis thaliana
transcript AT3G13772.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G13772.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA08G20640.1 (Glycine max), 3'ss of exon 6
--gtacatgacttacacttagccttcttttg---ctttactttttgggttgctaaacattttccggaatttgatgat------ccagGAGAGTGAAATCAAATGGGCTTCTCGGTGGGACACGTACCTTCTCATGAACGATGATCAAATCCACTGGTTTTCCATCATAAATTCACTTATGATTGTCC
   |   ||| | | |  | | || |   |     || || |  |  |||   | || || |    | |||| || |       ||||| ||||| ||||||||||| || ||||||||||| || ||| | ||||| |||||||| ||||||||||| |||||||| || || || |||||||| |
gtattgctgattaaaatcttggctaccaataaactttcacctcatttgttatgatacgttatggcaagtttgttggtactttttcagGAAAGTGATATCAAATGGGCATCACGGTGGGACACATATCTTTTAATGAATGATGATCAGATCCACTGGTTCTCCATCATTAACTCTCTGATGATTGTTC

upper sequence: AT3G13772.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA07G01240.1 (Glycine max), 3'ss of exon 6
--gtacatgacttacacttagccttcttttg---ctttactttttgggttgctaaacatttt---ccggaatttgatgat------ccagGAGAGTGAAATCAAATGGGCTTCTCGGTGGGACACGTACCTTCTCATGAACGATGATCAAATCCACTGGTTTTCCATCATAAATTCACTTATGATTGTCC
   |   ||| | | |  | | || ||  |     || || |  |   ||     | |  ||   ||  | |||| || |       ||||| ||||| ||||||||||| || ||||||||||| || ||| | ||||| |||||||| ||||||||||| |||||||| || ||  | |||||||| |
gtattgctgattaaaatcttggctactcataaattttcacctcattcattatatgatacgttaagccaaagtttgttggtattttttcagGAAAGTGATATCAAATGGGCATCACGGTGGGACACATATCTTTTAATGAATGATGATCAGATCCACTGGTTCTCCATCATTAACTCTTTGATGATTGTTC

upper sequence: AT3G13772.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: Vv09s0002g02140.t01 (Vitis vinifera), 3'ss of exon 6
---gtacatgacttacacttagccttcttttgctttactttttgggttgctaaacattttccggaatttgatgatccagGAGAGTGAAATCAAATGGGCTTCTCGGTGGGACACGTACCTTCTCATGAACGATGATCAAATCCACTGGTTTTCCATCATAAATTCACTTATGATTGTCC
    | | |     | |      ||| | ||     |   |  || ||  |  || | ||   |  ||      | ||||| ||| | |||||||||||||| |||||||| || ||||| || |||||||||||||| ||||||||||| ||||||||||| || || ||||||||||
gtaattctttttcgaaatccttgcttgtcttctcccatgatacggttttttttacttgtttttgccttattattttcagGAAAGTAACATCAAATGGGCTTCACGGTGGGATACATACCTCCTTATGAACGATGATCAGATCCACTGGTTCTCCATCATAAACTCTCTGATGATTGTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcttttgctttactttttgggttgctaaacattttccggaatttgatgatccagGAGAGTGAAATCAAATGGGCTTCTCGGTGGGACACGTACCTTCTCATGAACGATGATCAAATCCACTGGTTTTCCATCATAAATTCACTTATGATTGTCC
         tttacttttt  TA-rich tract