1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttattactccatttggttcatcttcttgaacaattcatgattcggttttatcagctatcactgttgatatcgatctttactttcttgtcgtatatcgagattaactttgttattttccagGAGAAACTCGGTTGCAAGTCGCCAATTGATACAATGAGGGAAGTTCGGAACAAGAAGGATCAGTGGAGGGGATGATGATAAATGGAGAGCTTCTTGCCTA
species | Arabidopsis thaliana |
transcript | AT3G10850.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAGAGCTCGAAACAAATCCATTTATGCGTGTTGATAAGCCAGAGATACAG GAGAAACTCGGTTGCAAGTCGCCAATTGATACAATGAGGGAAGTTCGGAACEST: gi|164210234|gb|ES183272.1|ES183272
genomic: AAGAGCTCGAAACAAATCCATTTATGCGTGTTGATAAGCCAGAGATACAGgttattactc ... tattttccagGAGAAACTCGGTTGCAAGTCGCCAATTGATACAATGAGGGAAGTTCGGAAC
EST: TATGCGTGTTGATAAGCCAGAGATACAG GAGAAACTCGGTTGCAAGTCGCCAATTGATACAATGAGGGAAGTTCGGAACEST: gi|125035720|gb|EL107989.1|EL107989
genomic: TATGCGTGTTGATAAGCCAGAGATACAGgttattactc ... tattttccagGAGAAACTCGGTTGCAAGTCGCCAATTGATACAATGAGGGAAGTTCGGAAC
EST: AAGAGCTCGAAACAAATCCATTTATGCGTGTTGATAAGCCAGAGATACAG GAGAAACTCGGTTGCAAGTCGCCAEST: gi|125295027|gb|EL309112.1|EL309112
genomic: AAGAGCTCGAAACAAATCCATTTATGCGTGTTGATAAGCCAGAGATACAGgttattactc ... tattttccagGAGAAACTCGGTTGCAAGTCGCCA
EST: GAGCTCGAAACAAAATCCATTTATGCGTGTTGATAAGCCAGAGATACAG GAGAAACTCGGTTGCAAGTCGEST: gi|163998726|gb|ES059978.1|ES059978
genomic: GAGCTCGAAAC-AAATCCATTTATGCGTGTTGATAAGCCAGAGATACAGgttattactc ... tattttccagGAGAAACTCGGTTGCAAGTCG
EST: AAGAGCTCGAAACAAATCCATTTATGCGTGTTGATAAGCCAGAGATACAG GAGAAACTCGGTTGCAAGEST: gi|125311440|gb|EL325525.1|EL325525
genomic: AAGAGCTCGAAACAAATCCATTTATGCGTGTTGATAAGCCAGAGATACAGgttattactc ... tattttccagGAGAAACTCGGTTGCAAG
EST: AAGAGCTCGAAACAAATCCATTTATGCGTGTTGATAAGCCAGAGATACAG GAGAAACTCGGTTGCAAGTCGEST: gi|125219185|gb|EL233270.1|EL233270
genomic: AAGAGCTCGAAACAAATCCATTTATGCGTGTTGATAAGCCAGAGATACAGgttattactc ... tattttccagGAGAAACTCGGTTGCAAGTCG
EST: GCGTGTTGATAAGCCAGAGATACAG GAGAAACTCGGTTGCAAGTCGCCAATTGATACAATGAGGGAAGTTCGGAACEST: gi|19742495|gb|AU227848.1|AU227848
genomic: GCGTGTTGATAAGCCAGAGATACAGgttattactc ... tattttccagGAGAAACTCGGTTGCAAGTCGCCAATTGATACAATGAGGGAAGTTCGGAAC
EST: AAGAGCTCGAAACAAATCCATTTATGCGTGTTGATAAGCCAGAGATACAG GAGAAACTCGGTTGCAAGTCGCCAATTGATACAATGAGGGAAGTTCGGAACEST: gi|164063351|gb|ES172976.1|ES172976
genomic: AAGAGCTCGAAACAAATCCATTTATGCGTGTTGATAAGCCAGAGATACAGgttattactc ... tattttccagGAGAAACTCGGTTGCAAGTCGCCAATTGATACAATGAGGGAAGTTCGGAAC
EST: CAGAGATACAG GAGAAACTCGGTTGCAAGTCGCCAATTGATACAATGAGGGAAGTTCGGAACEST: gi|164085423|gb|ES121759.1|ES121759
genomic: CAGAGATACAGgttattactc ... tattttccagGAGAAACTCGGTTGCAAGTCGCCAATTGATACAATGAGGGAAGTTCGGAAC
EST: CATTTATGCGTGTTGATAAGCCAGAGATACAG GAGAAACTCGGTTGCAAGTCGCCAATTGATACAAEST: gi|124971557|gb|EL045314.1|EL045314
genomic: CATTTATGCGTGTTGATAAGCCAGAGATACAGgttattactc ... tattttccagGAGAAACTCGGTTGCAAGTCGCCAATTGATACAA
EST: CAAATCCATTTATGCGTGTTGATAAGCCAGAGATACAG GAGAAACTCGGTTGCAAGTCGCCAATTGATACAATGAGGGAAGTTCGGAACEST: gi|86027936|gb|DR323689.1|DR323689
genomic: CAAATCCATTTATGCGTGTTGATAAGCCAGAGATACAGgttattactc ... tattttccagGAGAAACTCGGTTGCAAGTCGCCAATTGATACAATGAGGGAAGTTCGGAAC
EST: AAGAGCTCGAAACAAATCCATTTATGCGTGTTGATAAGCCAGAGATACAG GAGAAACTCGGTTGCAAGTCGCCAATTGATACAATGAGGGAAGTTCGGAACEST: gi|125236920|gb|EL251005.1|EL251005
genomic: AAGAGCTCGAAACAAATCCATTTATGCGTGTTGATAAGCCAGAGATACAGgttattactc ... tattttccagGAGAAACTCGGTTGCAAGTCGCCAATTGATACAATGAGGGAAGTTCGGAAC
EST: GATAAGCCAGAGATACAG GAGAAACTCGGTTGCAAGTCGCCAATTGATACAATGAGGGAAGTTCGGAACEST: gi|124949748|gb|EL025292.1|EL025292
genomic: GATAAGCCAGAGATACAGgttattactc ... tattttccagGAGAAACTCGGTTGCAAGTCGCCAATTGATACAATGAGGGAAGTTCGGAAC
EST: AAGAGCTCGAAACAAATCCATTTATGCGTGTTGATAAGCCAGAGATACAG GAGAAACTCGGTTGCAAGTCGEST: gi|86076505|gb|DR372262.1|DR372262
genomic: AAGAGCTCGAAACAAATCCATTTATGCGTGTTGATAAGCCAGAGATACAGgttattactc ... tattttccagGAGAAACTCGGTTGCAAGTCG
EST: AAGAGCTCGAAACAAATCCATTTATGCGTGTTGATAAGCCAGAGATACAG GAGAAACTCGGTTGCAAGTCGCCAATTGATACAATGAGGGAAGTTCGGAACEST: gi|124789508|gb|EH879187.1|EH879187
genomic: AAGAGCTCGAAACAAATCCATTTATGCGTGTTGATAAGCCAGAGATACAGgttattactc ... tattttccagGAGAAACTCGGTTGCAAGTCGCCAATTGATACAATGAGGGAAGTTCGGAAC
EST: GTTGATAAGCCAGAGATACAG GAGAAACTCGGTTGCAAGTCGCCAATTGATACAATGAGGGAAGTTCGGAACEST: gi|164048888|gb|EL981912.1|EL981912
genomic: GTTGATAAGCCAGAGATACAGgttattactc ... tattttccagGAGAAACTCGGTTGCAAGTCGCCAATTGATACAATGAGGGAAGTTCGGAAC
EST: CAAATCCATTTATGCGTGTTGATAAGCCAGAGATACAG GAGAAACTCGGTTGCAAGTCGCCAATTGATACAATGAGGGAAGTTCGGAACEST: gi|86078227|gb|DR373984.1|DR373984
genomic: CAAATCCATTTATGCGTGTTGATAAGCCAGAGATACAGgttattactc ... tattttccagGAGAAACTCGGTTGCAAGTCGCCAATTGATACAATGAGGGAAGTTCGGAAC
EST: AAGAGCTCGAAACAAATCCATTTATGCGTGTTGATAAGCCAGAGATACAG GAGAAACTCGGTTGCAAGTCGCCAATTGATACAATGAGGGAAGTTCGGAAC
genomic: AAGAGCTCGAAACAAATCCATTTATGCGTGTTGATAAGCCAGAGATACAGgttattactc ... tattttccagGAGAAACTCGGTTGCAAGTCGCCAATTGATACAATGAGGGAAGTTCGGAAC
gatatcgatctttactttcttgtcgtatatcgagattaactttgttattttccagGAGAAACTCGGTTGCAAGTCGCCAATTGATACAATGAGGGAAGTTCGGAACAAGAAGGATCAGTGGAGGGGATGATGATAAATGGAGAGCTTCTTGCCTA
gattaac putative branch site (score: 2)
ctttgttattttcc CT-rich tract
attaactttgttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttattactccatttggttcatcttcttgaacaattcatgattcggttttatcagctatcactgttgatatcgatctttactttcttgtcgtatatcgagattaactttgttattttccagGAGAAACTCGGTTGCAAGTCGCCAATTGATACAATGAGGGAAGTTCGGAACAAGAAGGATCAGTGGAGGGGATGATGATAAATGGAGAGCTTCTTGCCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT