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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcttttttcgctctctctgattccctgtagagccttgagatggaagattacagattgctaatagagaaaatattggaagaagaactctatcaaatactcgatctttttggttgattgcagGGACATGGTTTTAGAAACGATCTTTTCCAAATGATGGCCGATATAAAACCCCGTTTCATCCGGTTCCCAG

Basic information

species Arabidopsis thaliana
transcript AT3G10740.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125121618|gb|EL168702.1|EL168702
EST:     GGTCAATATGGATTGACCAAGTCTCGGCCATGCCAGTGGATACTCACAAG                         GGACATTGGTTTTAAGAAACG
genomic: GGTCAATATGGATTGACCAAGTCTCGGCCATGCCAGTGGATACTCACAAGgttctttttt ... ttgattgcagGGACAT-GGTTTTA-GAAACG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaaatattggaagaagaactctatcaaatactcgatctttttggttgattgcagGGACATGGTTTTAGAAACGATCTTTTCCAAATGATGGCCGATATAAAACCCCGTTTCATCCGGTTCCCAG
                                           ggttgat  putative branch site (score: 5)
                      tatcaaata  TA-rich tract