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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtcaatcttaaaaatgttgcaccaaagtcacctatggtcttaaatctatgcataaataatgaaacacttgttctctacgcagACCGGGAGCAGTTCCAGCTGAAAGTTTTGAGTGAGGAAGACAGCAGGACAGCTTTAAAATTCTTCAGGTTTCTGCAACAAGACTCTTAAGACTTTGTGCA

Basic information

species Arabidopsis thaliana
transcript AT3G10405.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125225241|gb|EL239326.1|EL239326
EST:     AACCTATCTTTGAGTTAACTGAAGAAATCATGGGAGATCATGAGTTACTG                         ACCGGGAGCAGTTCCAGCTGAAAGTTTTGAGTGAGGAAGACAGCAG
genomic: AACCTATCTTTGAGTTAACTGAAGAAATCATGGGAGATCATGAGTTACTGgttagtcaat ... ctctacgcagACCGGGAGCAGTTCCAGCTGAAAGTTTTGAGTGAGGAAGACAGCAG
EST: gi|124707368|gb|EH798770.1|EH798770
EST:     TCTTTGAGTTAACTGAAGAAATCATGGGAGATCATGAGTTACTG                         ACCGGGAGCAGTTCCAGCTGAAAGTTTTGAGTGAGGAAGACAGCAGGACAG
genomic: TCTTTGAGTTAACTGAAGAAATCATGGGAGATCATGAGTTACTGgttagtcaat ... ctctacgcagACCGGGAGCAGTTCCAGCTGAAAGTTTTGAGTGAGGAAGACAGCAGGACAG
EST: gi|116463250|gb|EG505842.1|EG505842
EST:     AACCTATCTTTGAGTTAACTGAAGAAATCATGGGAGATCATGAGTTACTG                         ACCGGGAGCAGTTCCAGCTGAAAGTTTTGAGTGAGGAAGACAGCAGGACAG
genomic: AACCTATCTTTGAGTTAACTGAAGAAATCATGGGAGATCATGAGTTACTGgttagtcaat ... ctctacgcagACCGGGAGCAGTTCCAGCTGAAAGTTTTGAGTGAGGAAGACAGCAGGACAG
EST: gi|86076630|gb|DR372387.1|DR372387
EST:     AACCTATCTTTGAGTTAACTGAAGAAATCATGGGAGATCATGAGTTACTG                         ACCGGGAGCAGTTCCAGCTGAAAGTTTTGAGTGAGGAAGACAGCAGGACAG
genomic: AACCTATCTTTGAGTTAACTGAAGAAATCATGGGAGATCATGAGTTACTGgttagtcaat ... ctctacgcagACCGGGAGCAGTTCCAGCTGAAAGTTTTGAGTGAGGAAGACAGCAGGACAG
EST: gi|86051116|gb|DR346871.1|DR346871
EST:     AACCTATCTTTGAGTTAACTGAAGAAATCATGGGAGATCATGAGTTACTG                         ACCGGGAGCAGTTCCAGCTGAAAGTTTTGAGTGAGGAAGACAGCAGGACAG
genomic: AACCTATCTTTGAGTTAACTGAAGAAATCATGGGAGATCATGAGTTACTGgttagtcaat ... ctctacgcagACCGGGAGCAGTTCCAGCTGAAAGTTTTGAGTGAGGAAGACAGCAGGACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcacctatggtcttaaatctatgcataaataatgaaacacttgttctctacgcagACCGGGAGCAGTTCCAGCTGAAAGTTTTGAGTGAGGAAGACAGCAGGACAGCTTTAAAATTCTTCAGGTTTCTGCAACAAGACTCTTAAGACTTTGTGCA
                                       cttgttctct  CT-rich tract
            ttaaatctatgcataa  TA-rich tract