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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttgatacttaacaaaaaacattttagctaaataattacactgtattcgtaacagattttcctctgttttatcgttgtatagTACACCGGTTTTTCACCGCTGAGATAGCTTCATTCTATGAGAGTTACTATGCCAACAAGGGAATCAAAATCATCAAGGGAACTGTAGCAACTGGATTTAG

Basic information

species Arabidopsis thaliana
transcript AT3G09940.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G09940.2 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: Vv08s0007g03610.t01 (Vitis vinifera), 3'ss of exon 6
-------gtaagttgatacttaacaaaaaacattttagctaaataatta---------cactgtattcgtaacagattttcctctgttttatcgttgtatagTACACCGGTTTTTCACCGCTGAGATAGCTTCATTCTATGAGAGTTACTATGCCAACAAGGGAATCAAAATCATCAAGGGAACTGTAGCAACTGGATTTAG
        ||     ||| || |       |    |  | ||| ||||          ||||| |||| |       || |||  ||  | |  |||   ||| |  ||| ||||||| ||||  |||||| | || |||||| |||| ||||| || || ||||||||||| ||||||||||| ||||||  ||| |||| 
tattataatacacaaatattttattttgccccccctcacaaaaaaattttggttccaccactggattcatggttaccttacctaggtcatgttcttgc--agTGCCTCGGCTTTTCACTGCTGGTATAGCTGCTTTTTATGAGGGTTATTATGCTAATAAAGGAATCAAAATTATCAAGGGAACAGTAGCAGTTGGGTTTAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctaaataattacactgtattcgtaacagattttcctctgttttatcgttgtatagTACACCGGTTTTTCACCGCTGAGATAGCTTCATTCTATGAGAGTTACTATGCCAACAAGGGAATCAAAATCATCAAGGGAACTGTAGCAACTGGATTTAG
                   tcgtaac  putative branch site (score: 2)
                             ttttcctctgttttat  putative PPT
     taattaca  TA-rich tract