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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttctgcaaaaccacagcacgggctgaaactctatatcctgaatttcagattcttcatttgtacattatcctgaaccttaaatgccatgaatctatgattgtagGACACGGGTGACACTTAAAAGAGATGGAGTTGTTCTTGACTTGGTACCTCCTCTGACCAAAGTTCACAACCTAATCTTTGGACGAACTTGGGTCGATTCG

Basic information

species Arabidopsis thaliana
transcript AT3G09300.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G09300.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: PP1S20_97V6.1 (Physcomitrella patens), 3'ss of exon 6
gtacttctgcaaaaccacagcacgggctgaaactct--atatcctgaatttcagattct--tcatttgtacattatcctgaaccttaaatgccatgaatctatgattgt--agGACACGGGTGACACTTAAAAGAGATGGAGTTGTTCTTGACTTGGTACCTCCTCTGACCAAAGTTCACAACCTAATCTTTGGACGAACTTGGGTCGATTCG
            |   |  |  |     ||   | |      |   ||| ||   ||||  |     |    | ||  |  | |||| |     ||  | |||||| |   |||||| | |||   || |||| |       | || ||||| ||||| ||||| | ||||||||| |||||| |  | ||||||||||||||||| ||||| 
------------agtgagtgtccttttagaggtttttggcggcaccaatgtctctttctagtaggccgcggttgatgttttatcttata-attgtgggtatatgatcgcgcagGACAAGAGTGTTGCTGAAAAAATCCAACATGGTGCTTGATTTGGTGCCTCCGCCGACCAAAGTGCACAACGTGCTTTTTGGACGAACTTGGGTAGATTCC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attcttcatttgtacattatcctgaaccttaaatgccatgaatctatgattgtagGACACGGGTGACACTTAAAAGAGATGGAGTTGTTCTTGACTTGGTACCTCCTCTGACCAAAGTTCACAACCTAATCTTTGGACGAACTTGGGTCGATTCG
            tacattat  TA-rich tract