Sequence
atgc intronic sequence ATGC exonic sequencegtgcattaaattttctttaaaagcttttaagacccatcgttcatttatatttgaggtcaaatacatttctggtttttcttttcagGTGCCAGATTATTTATGTTGCAATATAACTCTTGAGATTTTCCGAGATCCTGTAATTTCTCCAAGTGGGGTTACATATGAAAGAGCAGCAATCCTTGAAC
Basic information
species | Arabidopsis thaliana |
transcript | AT3G07370.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G07370.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA03G22210.2 (Glycine max), 3'ss of exon 6
--------------------gtgcattaaattttctttaaaagctttt---aagacccatcgttcatttatatttga--ggtcaaatacatttctggtttttcttttcagGTGCCAGATTATTTATGTTGCAATATAACTCTTGAGATTTTCCGAGATCCTGTAATTTCTCCAAGTGGGGTTACATATGAAAGAGCAGCAATCCTTGAAC
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gtgtgtacatggcttgttttgttaattctatattcatcaaatcttttttcagtggtgccctggaaattaccatcttattaattacacaaattgtcttgttgagtctacagGTGCCAGATTATTTGTGCTGTAGAATTACACTCGACATTTTCCATGATCCTGTAATCACTCCAAGTGGACTTACATATGAGAGAGCAGTGATTCTTGAGC
upper sequence: AT3G07370.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: Vv00s0669g00010.t01 (Vitis vinifera), 3'ss of exon 2
--gtgcattaaattttctttaaaagcttttaagacccatcgttc--atttatatttgaggtcaaatacatttctggtttttc--------ttttcagGTGCCAGATTATTTATGTTGCAATATAACTCTTGAGATTTTCCGAGATCCTGTAATTTCTCCAAGTGGGGTTACATATGAAAGAGCAGCAATCCTTGAAC
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gtgagtactgtagctcctttaacattccctaaccccttcctttttaaattaaatgctaccttattttcttctagagaaactgaataaagattttcagGTTCCGGACTACCTATGCTGTAAAATTACACTTGATATTTTCCGCGACCCTGTCATTGCTCCAAGTGGGCTTACATATGAGAGAGAAGTGCTTCTTGACC
upper sequence: AT3G07370.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: Vv00s0642g00010.t01 (Vitis vinifera), 3'ss of exon 2
--gtgcattaaattttctttaaaagcttttaagacccatcgttcatttatatttgaggtcaaatacatttct-------------ggtttttcttttcagGTGCCAGATTATTTATGTTGCAATATAACTCTTGAGATTTTCCGAGATCCTGTAATTTCTCCAAGTGGGGTTACATATGAAAGAGCAGCAATCCTTGAAC
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gtgagtactgtagctcctttaacattccctaacccccttcctt--tttaaattaaatgctaccttattttcttctagagaaactgaataaagattttcagGTTCCGGACTACCTATGCTGTAAAATTACACTTGATATTTTCCGCGACCCTGTCATTGCTCCAAGTGGGCTTACATATGAGAGAGAAGTGCTTCTTGACCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86081005|gb|DR376762.1|DR376762EST: CTCTTGAACGAGTGTTTAAGAAAGCTGCAGAAGAAGATAAACCAACTGAG GTGCCAGATTATTTATGTTGCAATATAACTCTTGAGATTTTCCGAGATCCT
genomic: CTCTTGAACGAGTGTTTAAGAAAGCTGCAGAAGAAGATAAACCAACTGAGgtgcattaaa ... ttcttttcagGTGCCAGATTATTTATGTTGCAATATAACTCTTGAGATTTTCCGAGATCCT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gacccatcgttcatttatatttgaggtcaaatacatttctggtttttcttttcagGTGCCAGATTATTTATGTTGCAATATAACTCTTGAGATTTTCCGAGATCCTGTAATTTCTCCAAGTGGGGTTACATATGAAAGAGCAGCAATCCTTGAAC
tttctggtttttcttt CT-rich tract
ttcatttatatttga TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgcattaaattttctttaaaagcttttaagacccatcgttcatttatatttgaggtcaaatacatttctggtttttcttttcagGTGCCAGATTATTTATGTTGCAATATAACTCTTGAGATTTTCCGAGATCCTGTAATTTCTCCAAGTGGGGTTACATATGAAAGAGCAGCAATCCTTGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG