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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtcatttaacttttatgttagtgttttatctgccttttcatttgccgctacctcatcattgttttcttattctggtgttgtagGTCCTTTTCTTGATGTACCACTACTTTGCTGCTGCAGAGTACTATAATGCGATCCGTGTTTTCATTGCTTGCTATGTATGGATGACTGGATTTGGGAATT

Basic information

species Arabidopsis thaliana
transcript AT3G06550.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G06550.3 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA07G36550.1 (Glycine max), 3'ss of exon 6
-----------------gtttgtcatttaacttttatgttagtgttttatctgccttttcatttgccgctacctcatcattgttttcttattctggtgttgtagGTCCTTTTCTTGATGTACCACTACTTTGCTGCTGCAGAGTACTATAATGCGATCCGTGTTTTCATTGCTTGCTATGTATGGATGACTGGATTTGGGAATT
                  | | |   |  ||||  || ||| |||| ||  | |||     |||  |  | ||  ||  || |  | | |     ||     ||||  | || ||||||||||| |||||||||||  | ||   ||| ||||| |||||| | |||||||||   ||||| |||||||||||||||||||| |
agattttctgattattcatctcttgctgtacttacat-ttaatgttataaattcctcaaattttaacatt-ccatatttttatcatttgacatccgta--acagGTTTTGTTTTTGATGTACCATTACTTTGCTGCATCTGAAATCTACAATGCAATCCGTTTGTTCATTGCTGCATATGTTTGGATGACTGGATTTGGGAACT

upper sequence: AT3G06550.3 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA17G04070.1 (Glycine max), 3'ss of exon 6
---------gtttgtcatttaacttttatgttagtgttttatct----gccttttcatttgccgctacctcatcattgttttcttattctggtgttgtagGTCCTTTTCTTGATGTACCACTACTTTGCTGCTGCAGAGTACTATAATGCGATCCGTGTTTTCATTGCTTGCTATGTATGGATGACTGGATTTGGGAATT
         | || |   |    || | |  |    ||| || |       | ||||  |     ||   |||  ||   |  ||   |   |||   ||||  | || |||||||| || |||||||||||  | ||   ||| ||||| |||||| | |||||||||   |||||||||||||||||||||||||| |
atcagatctgattattcatctctttctgtacttacatttaatgttataaattcttcaaattttaatattccatattttaataatttgacatctgtaacagGTTTTGTTTTTGATGTATCATTACTTTGCTGCATCTGAAATCTACAATGCAATCCGTTTGTTCATTGCTGCATATGTATGGATGACTGGATTTGGGAACT

upper sequence: AT3G06550.3 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: Vv05s0077g00620.t01 (Vitis vinifera), 3'ss of exon 6
---------gtttgtcattta-acttttat-gttagtgttttat-ctgccttttcatttgccgctacct-catcattgttttcttattctggtgttgtagGTCCTTTTCTTGATGTACCACTACTTTGCTGCTGCAGAGTACTATAATGCGATCCGTGTTTTCATTGCTTGCTATGTATGGATGACTGGATTTGGGAATT
            | || |  | |||||| | |  ||  || ||| |||| || |   |   |   | |       |   | ||||  |    |  |  ||||  | || |||||||| || |||||||| ||  ||||   ||||||||| |||||  |||| ||||||   ||||| ||||||||||||||||||||||
atatgtaggaactatcctagacacttttgttgccagctttatattctgctttctagatgttcatcatcggtggtctcactctctttcttctatcctacagGTATTATTTTTGATGTATCATTACTTTGCGGCAACAGAAATCTATAATGCCATCCGCCTTTTTATTGCTGCATATGTGTGGATGACTGGATTTGGGAATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgccttttcatttgccgctacctcatcattgttttcttattctggtgttgtagGTCCTTTTCTTGATGTACCACTACTTTGCTGCTGCAGAGTACTATAATGCGATCCGTGTTTTCATTGCTTGCTATGTATGGATGACTGGATTTGGGAATT
                             attgttttcttatt  TA-rich tract