Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgatttcacttttcttaaacttcatgtaacctaaggaatgagataggctgattcctactactgcttacactttagtgatccaacgtctgacagtattgttttgaatattgaattagACGGTGCAAGGGGCACTTCTTAGCTGCTCATATGCTGTGCTTGACTATGCCCAAACCGGTCTAATTGCAGCAGTTTTTATCTTCAAA

Basic information

species Arabidopsis thaliana
transcript AT3G04460.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G04460.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: Vv14s0036g01130.t01 (Vitis vinifera), 3'ss of exon 6
gtatgatttcacttttcttaaacttcatgtaacctaaggaatgagataggctgattcctactactgcttacactttagtgatccaacgtctgacagtattgttt---tgaatattgaatt--agACGGTGCAAGGGGCACTTCTTAGCTGCTCATATGCTGTGCTTGACTATGCCCAAACCGGTCTAATTGCAGCAGTTTTTATCTTCAAA
                    |   | | | ||   | ||| |    ||   || ||  ||  |  |       | ||   ||   | ||    ||  |||||||     ||| ||  | |  || |  ||||||| ||||| || |||||| | ||| || ||||||||||||| ||||| || |||||||||||||| ||  |||| |||
--------------------agtatta-gcaagaaatggagttctctatcatg-ttgttatcataggaatagttctaactatt--atgtggatcaagattgtttgaccaaattttacaatccagGCATTGCAAGGAGCACTGCTCAGCTGCACCTATACTATGCTTGACTATGCACAAACTGGGCTAATTGCAGCAGTATTCTTCTTTAAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19877662|gb|AU238493.1|AU238493
EST:     AGATTCGGAATCATGAGCGTGAGAGACTTCGTGGTCCTCCATGGTTAAAA                         ACGGTGCAAGGGGCACTTTCTTAGCTGCTCATATGCTGTGCTTGACTATGC
genomic: AGATTCGGAATCATGAGCGTGAGAGACTTCGTGGTCCTCCATGGTTAAAAgtatgatttc ... attgaattagACGGTGCAAGGGGCACTT-CTTAGCTGCTCATATGCTGTGCTTGACTATGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcttacactttagtgatccaacgtctgacagtattgttttgaatattgaattagACGGTGCAAGGGGCACTTCTTAGCTGCTCATATGCTGTGCTTGACTATGCCCAAACCGGTCTAATTGCAGCAGTTTTTATCTTCAAA
                                tattgttttgaatatt  TA-rich tract