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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggagcattgaggcttcatgtcttcagaatcaatacttttgaattgggtttatatgctttggaatcccccttacaaaatactactaaacggtttttcagGTTACTTACCGGGAATCTTGGATGTTAAATTACTTGATGAAGTGTTTAAG

Basic information

species Arabidopsis thaliana
transcript AT3G03630.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86088056|gb|DR383815.1|DR383815
EST:     AGTTGGCGTTGAACCATCAGAAAGAAGTGTGATTTCTGGAGACAACCCTG                         GTTACTTACCGGGAATCTTGGATGTTAAATTACTTGATGAAGTGTTTAAG
genomic: AGTTGGCGTTGAACCATCAGAAAGAAGTGTGATTTCTGGAGACAACCCTGgtaaggagca ... ggtttttcagGTTACTTACCGGGAATCTTGGATGTTAAATTACTTGATGAAGTGTTTAAG
EST: gi|86078792|gb|DR374549.1|DR374549
EST:     GCGTTGAACCATCAGAAAGAAGTGTGATTTCTGGAGACAACCCTG                         GTTACTTACCGGGAATCTTGGATGTTAAATTACTTGATGAAGTGTTTAAG
genomic: GCGTTGAACCATCAGAAAGAAGTGTGATTTCTGGAGACAACCCTGgtaaggagca ... ggtttttcagGTTACTTACCGGGAATCTTGGATGTTAAATTACTTGATGAAGTGTTTAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgggtttatatgctttggaatcccccttacaaaatactactaaacggtttttcagGTTACTTACCGGGAATCTTGGATGTTAAATTACTTGATGAAGTGTTTAAG
                                     tactaaa  putative branch site (score: 1)
                                               tttttc  putative PPT
                              aaaatactactaaa  TA-rich tract