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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttttcactctctagtcacaaaggtcaaaactttttccctttaaacatcattcaaaacttataccattgtctgaaaccgcagGTCTTGCGATCTCTACAATCTGTTATCTTCAATTTTTCCCGCCACCATATCACACCGAAG

Basic information

species Arabidopsis thaliana
transcript AT3G02600.5
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86084976|gb|DR380735.1|DR380735
EST:     TGATGACTATTGGCATCATTGGCAAGACGTCTTTGCAGGAGGCTTGCTAG                         GTCTTGCGATCTCTACAATCTGTTATCTTCAATTTTTCCCGCCACCATATC
genomic: TGATGACTATTGGCATCATTGGCAAGACGTCTTTGCAGGAGGCTTGCTAGgtttgttttc ... gaaaccgcagGTCTTGCGATCTCTACAATCTGTTATCTTCAATTTTTCCCGCCACCATATC
EST: gi|86083857|gb|DR379616.1|DR379616
EST:     TGATGACTATTGGCATCATTGGCAAGACGTCTTTGCAGGAGGCTTGCTAG                         GTCTTGCGATCTCTACAATCTGTTATCTTCAATTTTTCCCGCCACCATATC
genomic: TGATGACTATTGGCATCATTGGCAAGACGTCTTTGCAGGAGGCTTGCTAGgtttgttttc ... gaaaccgcagGTCTTGCGATCTCTACAATCTGTTATCTTCAATTTTTCCCGCCACCATATC
EST: gi|86075359|gb|DR371116.1|DR371116
EST:     TGATGACTATTGGCATCATTGGCAAGACGTCTTTGCAGGAGGCTTGCTAG                         GTCTTGCGATCTCTACAATCTGTTATCTTCAATTTTTCCCGCCACCATATC
genomic: TGATGACTATTGGCATCATTGGCAAGACGTCTTTGCAGGAGGCTTGCTAGgtttgttttc ... gaaaccgcagGTCTTGCGATCTCTACAATCTGTTATCTTCAATTTTTCCCGCCACCATATC
EST: gi|86083368|gb|DR379127.1|DR379127
EST:     TGATGACTATTGGCATCATTGGCAAGACGTCTTTGCAGGAGGCTTGCTAG                         GTCTTGCGATCTCTACAATCTGTTATCTTCAATTTTTCCCGCCACCATATC
genomic: TGATGACTATTGGCATCATTGGCAAGACGTCTTTGCAGGAGGCTTGCTAGgtttgttttc ... gaaaccgcagGTCTTGCGATCTCTACAATCTGTTATCTTCAATTTTTCCCGCCACCATATC
EST: gi|86075218|gb|DR370975.1|DR370975
EST:     TGATGACTATTGGCATCATTGGCAAGACGTCTTTGCAGGAGGCTTGCTAG                         GTCTTGCGATCTCTACAATCTGTTATCTTCAATTTTTCCCGCCACCATATC
genomic: TGATGACTATTGGCATCATTGGCAAGACGTCTTTGCAGGAGGCTTGCTAGgtttgttttc ... gaaaccgcagGTCTTGCGATCTCTACAATCTGTTATCTTCAATTTTTCCCGCCACCATATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaactttttccctttaaacatcattcaaaacttataccattgtctgaaaccgcagGTCTTGCGATCTCTACAATCTGTTATCTTCAATTTTTCCCGCCACCATATCACACCGAAG
                      attcaaaacttata  TA-rich tract