1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgagtcctttcttcttcttcttcttctttttcatagtttatattattatgtcttatgaaacatatacttattgagtaacatataaacagGAGTTTGAGAATGACTCAGGATCAAGCCAAGTGTTTTGGCTGCTAAAAGAGAGTGAGCTGACACCAAGCAATTCCAACATCTTGGATGGTCGTTACGCTG
species | Arabidopsis thaliana |
transcript | AT3G01480.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTGGGACAATGGCAATGGCAAGAGAA GAGTTTGAGAATGACTCAGGATCAAGCCAAGTGTTTTGGCTGCTAAAAAGAEST: gi|125138346|gb|EL177777.1|EL177777
genomic: TTGGGACAATGGCAATGGCAAGAGAAgtgagtcctt ... atataaacagGAGTTTGAGAATGACTCAGGATCAAGCCAAGTGTTTTGGCTGCTAAAA-GA
EST: TGATTCCTTTCAACGCTTTTGGGACAATGGCAATGGCAAGAGAA GAGTTTGAGAATGACTCAGGATCAAGCCAAGTGTTTTGGCTGCTAAAA-AGEST: gi|125202605|gb|EL217559.1|EL217559
genomic: TGATTCCTTTCAACGCTTTTGGGACAATGGCAATGGCAAGAGAAgtgagtcctt ... atataaacagGAGTTTGAGAATGACTCAGGATCAAGCCAAGTGTTTTGGCTGCTAAAAGAG
EST: AGGTTGTGATTCCTTTCAACGCTTTTGGGACAATGGCAATGGCAAGAGAA GAGTTTGAGAAEST: gi|86080442|gb|DR376199.1|DR376199
genomic: AGGTTGTGATTCCTTTCAACGCTTTTGGGACAATGGCAATGGCAAGAGAAgtgagtcctt ... atataaacagGAGTTTGAGAA
EST: AGGTTGTGATYCCTTTCAACGCTTTTGGGACAATGGCAATGGCAAGAGAA GAGTTTGAGAATGACTCAGGATCAAGCCAAGTGTTTTGGCTGCTAAAAGAG
genomic: AGGTTGTGATTCCTTTCAACGCTTTTGGGACAATGGCAATGGCAAGAGAAgtgagtcctt ... atataaacagGAGTTTGAGAATGACTCAGGATCAAGCCAAGTGTTTTGGCTGCTAAAAGAG
agtttatattattatgtcttatgaaacatatacttattgagtaacatataaacagGAGTTTGAGAATGACTCAGGATCAAGCCAAGTGTTTTGGCTGCTAAAAGAGAGTGAGCTGACACCAAGCAATTCCAACATCTTGGATGGTCGTTACGCTG
gagtaac putative branch site (score: 2)
atattattatgtctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtcctttcttcttcttcttcttctttttcatagtttatattattatgtcttatgaaacatatacttattgagtaacatataaacagGAGTTTGAGAATGACTCAGGATCAAGCCAAGTGTTTTGGCTGCTAAAAGAGAGTGAGCTGACACCAAGCAATTCCAACATCTTGGATGGTCGTTACGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA