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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcctaacgtatctactcttattttcattagagaaatctctattcccatttttcgataaaggcgtaaaagcgctgtcttcatttgtagATTGACGAGGAGATTCTCCAAGAAGTTATCAATATGGGATTTGACAGAAACCACCTCATCGAATCGCTCCGCAACCGAACCCAGAATGAT

Basic information

species Arabidopsis thaliana
transcript AT3G01090.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G01090.2 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA13G05700.1 (Glycine max), 3'ss of exon 6
------------gtaagcctaacgtatctactcttattttcattagagaaatctctattcccatttttcgataaaggcgtaaaagcgctgtcttcatttgtagATTGACGAGGAGATTCTCCAAGAAGTTATCAATATGGGATTTGACAGAAACCACCTCATCGAATCGCTCCGCAACCGAACCCAGAATGAT
            | |    ||  | |  || | |  | ||  |||   ||   | | ||   ||      |  ||    | || |           |||||||||||| ||||||||||| || |||||  | ||||||||||||||||| || ||  |  | ||||| ||  ||||| | |  || ||||| 
ccaacaccacacgcataagtattgcagataatatggtgtttgttacttaa---tatgttataatccaaaaaagaaaaaatcaacgaatatcacggttttgtagATTGATGAGGAGATTCTTCAGGAAGTGGTTAATATGGGATTTGACAGGAATCAATTGGTTGAATCTCTTAGCAACAGGATACAAAATGAG

upper sequence: AT3G01090.2 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA08G26180.1 (Glycine max), 3'ss of exon 6
gtaagcctaacgtatctactcttattttcattagagaaatctctattcccatttttcga------taaaggcgtaa--aagcgctgtcttcattt-gtagATTGACGAGGAGATTCTCCAAGAAGTTATCAATATGGGATTTGACAGAAACCACCTCATCGAATCGCTCCGCAACCGAACCCAGAATGAT
| |      |   ||  ||  |     | || |     || |   ||   || ||   |      |||| |   ||  ||    | || |  ||| |||||||||||||||||| || || |||||  | || |||||||||||||| || ||  |  | ||||| ||  | ||| | |  || ||||| 
gcactttacattcattcacattggggattatgaagtgtatgttacttgatatattataatcagtctaaatgataaaccaaatcatatcatggttttgtagATTGACGAGGAGATCCTTCAGGAAGTGGTGAAAATGGGATTTGACAGGAATCAATTGGTTGAATCTCTTGGGAACAGGATACAAAATGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86059932|gb|DR355689.1|DR355689
EST:     CGAGGTATTTAGCTGTTCCTCCTCCAGATACTGTGCAACAGGCAAAAAAG                         ATTGACGAGGAGATTCTCCAAGAAGTTATCAATATGGGATTTGACAGAAAC
genomic: CGAGGTATTTAGCTGTTCCTCCTCCAGATACTGTGCAACAGGCAAAAAAGgtaagcctaa ... tcatttgtagATTGACGAGGAGATTCTCCAAGAAGTTATCAATATGGGATTTGACAGAAAC
EST: gi|125251109|gb|EL265194.1|EL265194
EST:     CGAGGTATTTAGCTGTTCCTCCTCCAGATACTGTGCAACAGGCAAAAAAG                         ATTGACGAGGAGATTCTCCAAGAAGTTATCAAT
genomic: CGAGGTATTTAGCTGTTCCTCCTCCAGATACTGTGCAACAGGCAAAAAAGgtaagcctaa ... tcatttgtagATTGACGAGGAGATTCTCCAAGAAGTTATCAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatctctattcccatttttcgataaaggcgtaaaagcgctgtcttcatttgtagATTGACGAGGAGATTCTCCAAGAAGTTATCAATATGGGATTTGACAGAAACCACCTCATCGAATCGCTCCGCAACCGAACCCAGAATGAT
                                          tcttcattt  CT-rich tract
              attttt  TA-rich tract