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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgctctgtgttaatatgtcataaaggttgttgatcatagttataacatttctgtctctaaatccgttgtttatcttgggttgaaaacagGGTGTGCAACGGTGCACTTTCTACGTACAAAACGGCTTCTGTAAGTTTGGATCAACATGTAAGTTTGATCATCCAATGGGAACGATCAGATACAATCCTT

Basic information

species Arabidopsis thaliana
transcript AT2G47850.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G47850.2 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: Vv07s0104g01460.t01 (Vitis vinifera), 3'ss of exon 6
-----gtatgctc-tgtgt-taatatgtcataaaggttgttgatca--tagttataacatttctgtctctaaatccgttgtttatcttgggttgaaaacagGGTGTGCAACGGTGCACTTTCTACGTACAAAACGGCTTCTGTAAGTTTGGATCAACATGTAAGTTTGATCATCCAATGGGAACGATCAGATACAATCCTT
      ||| ||| | | | |||||| |||      |   |  | |  ||   ||    ||| |    ||  ||| | | || || |    |    ||||||| |||||||  |||||||||||  | ||||| || | ||| |||||||| || |||||||| || ||||||||| |||| |  || ||||||| ||| |
tgtccctatactcatatatgtaatatttcaatgttctgtctatttagctaagaatgctgtttttaatgctttatctgatcttcatatctt-taatgaacagGGGGTGCAACCTTGCACTTTCTATCTGCAAAATGGGTACTGCAAGTTTGGGTCCACATGTAAATTCGATCATCCACTGGGGAACATGAGATACAGTCCAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19876014|gb|AU236845.1|AU236845
EST:     CACCAAGAGCGAATTGCGTCCTCAGCCCCATTGGTCTTCCTCTACGCCCG                         GGTGTGCAACGGTGCACTTTCTACGTACAAAACGGCTTCTGTAAGTTTGGA
genomic: CACCAAGAGCGAATTGCGTCCTCAGCCCCATTGGTCTTCCTCTACGCCCGgtatgctctg ... ttgaaaacagGGTGTGCAACGGTGCACTTTCTACGTACAAAACGGCTTCTGTAAGTTTGGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catagttataacatttctgtctctaaatccgttgtttatcttgggttgaaaacagGGTGTGCAACGGTGCACTTTCTACGTACAAAACGGCTTCTGTAAGTTTGGATCAACATGTAAGTTTGATCATCCAATGGGAACGATCAGATACAATCCTT
     ttataacattt  TA-rich tract