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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagagacacacaagcttcatcataaaaacagcatctgaaacaaatacaagatcaaactgattcaatggagatgtataaaaatggattacagGTTCGGTACCAGAGCAGGAAGAAGCTAGCAGAACAACGTCCTCGAGTGAAAGGCCAGTTCGTGCGAACCGTGAATTCAGACGCGTCTACAAAATCATGAA

Basic information

species Arabidopsis thaliana
transcript AT2G46790.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G46790.2 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: Vv15s0048g02540.t01 (Vitis vinifera), 3'ss of exon 8
-----gtaagagacaca--caagcttcatcataaaaacagcatctgaaacaaatacaagatcaaactgattcaatggagatgtataaaaatggat--tacagGTTCGGTACCAGAGCAGGAAGAAGCTAGCAGAACAACGTCCTCGAGTGAAAGGCCAGTTCGTGCGAACCGTGAATTCAGACGCGTCTACAAAATCATGAA-
      |  ||  ||    |||| ||       |   |   || | | ||||  | |  || ||  || | |||| |     |  ||   |   |   ||||||||| ||||| |||||||| | ||| ||||| || ||||| ||||||||||| ||||| || |||   ||| |  | ||| | || |     | |||   
gttagcttggattcatctccaagttttgctgatagcgccaaattt-atacaaggatac-atgaagttgttccaattgtttaatgcaagttttcttaacacagGTTCGATACCAAAGCAGGAAAAGGCTTGCAGAGCAGCGTCCCCGAGTGAAAGGACAGTTTGTTCGACAAGTGCAGACTGACAC-TCCAACCGCTGATGGGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaacaaatacaagatcaaactgattcaatggagatgtataaaaatggattacagGTTCGGTACCAGAGCAGGAAGAAGCTAGCAGAACAACGTCCTCGAGTGAAAGGCCAGTTCGTGCGAACCGTGAATTCAGACGCGTCTACAAAATCATGAA
                  aactgat  putative branch site (score: 3)
                                     tataaaaatggatta  TA-rich tract