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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagaagaaactatatttagtttgttcaatttcttatagaatatattttgagcattgtcattcaacactttttttaaaagGTTCAAAACATCCGACCAAAGATGGTAGCTGAACTTCGTGAGCGGTTTGCACATCTTAACCTTACTTTCTCAATTGGGGGACAGATAAGCTTCGAT

Basic information

species Arabidopsis thaliana
transcript AT2G45790.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G45790.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA09G39800.1 (Glycine max), 3'ss of exon 8
---------------gtagaagaaactatatttagtttgttcaatttcttatagaatatattttgagcattgtcattcaacactttt----tttaaa-----agGTTCAAAACATCCGACCAAAGATGGTAGCTGAACTTCGTGAGCGGTTTGCACATCTTAACCTTACTTTCTCAATTGGGGGACAGATAAGCTTCGAT
                |  |  | | | | |  | |||   | ||   |  |  ||| |    ||   |   | |  | | |  |||    |||||      ||||||| ||||| || ||||| |||||  ||| ||||||||||  |||||| ||||||||| | || ||||| ||||| ||||||||||| || |||
gttatgtattttggtttttatcatattctctagaattttcactatccatattgaaatgttaggtgtataactttaccctaaaagtttgcaatttaagttctcagGTTCACAACATACGCCCAAAAATGGTTTCTGTACTTCGTGAGAAGTTTGCTCATCTTAACTTGACATTCTCCATTGGAGGACAGATAAGTTTTGAT

upper sequence: AT2G45790.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA18G46390.1 (Glycine max), 3'ss of exon 8
----------------gtagaagaaactatatttagtttgttcaatttcttatagaatatattttgagcattgtcattcaacactttt----tttaaa-----agGTTCAAAACATCCGACCAAAGATGGTAGCTGAACTTCGTGAGCGGTTTGCACATCTTAACCTTACTTTCTCAATTGGGGGACAGATAAGCTTCGAT
                 |  |  | | | | |  | |||   | ||   |  |  ||| |     |   | | | || | | |  |||    |||||      ||||||| || || || || || |||||  ||| ||||||||||  |||||| ||||||||| | || ||||| ||||| ||||||||||| || || 
ggttatgtattttggtttttatcacattctctagaattttcactatccatattgaaatgttaggcgtataattttatgctaaaagtttgcaatttaagttctcaGGTTCACAATATACGCCCGAAAATGGTTTCTGTACTTCGTGAGAAGTTTGCTCATCTTAACTTGACATTCTCCATTGGAGGACAGATAAGTTTTGA-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86074350|gb|DR370107.1|DR370107
EST:     ATTTGAGAGATATGATAAG                         GTTCAAAACATCCGACCAAAGATGGTAGCTGAACTTCGTGAGCGGTTTGCA
genomic: ATTTGAGAGATATGATAAGgtagaagaaa ... tttttaaaagGTTCAAAACATCCGACCAAAGATGGTAGCTGAACTTCGTGAGCGGTTTGCA
EST: gi|124763770|gb|EH853900.1|EH853900
EST:     AGCCAAGAAGAAAGAGATGAATTTGAGAGATATGATAAG                         GTTCAAAACATCCGACCAAAGATGGTAGCTGAACTTCG
genomic: AGCCAAGAAGAAAGAGATGAATTTGAGAGATATGATAAGgtagaagaaa ... tttttaaaagGTTCAAAACATCCGACCAAAGATGGTAGCTGAACTTCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaatttcttatagaatatattttgagcattgtcattcaacactttttttaaaagGTTCAAAACATCCGACCAAAGATGGTAGCTGAACTTCGTGAGCGGTTTGCACATCTTAACCTTACTTTCTCAATTGGGGGACAGATAAGCTTCGAT
                                        cacttttttt  CT-rich tract
     ttcttatagaatatat  TA-rich tract