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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaccattcgcaaacaaaaaccaacccaactcttatataaaagataagtaacaagagaatcaaacggtgtacaaacagGTGTTCAATGAGATCAATAGCCGGGAAATAGAGAAGATAAATGTGTTCAAAGGAATGTTCAATAGCTGGGTGTTCACTTGGGTAATGACTGTGACGGTAG

Basic information

species Arabidopsis thaliana
transcript AT2G41560.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125098518|gb|EL154640.1|EL154640
EST:     CCACAGCCGTTCTTAACACAGTCATCTTCAACTCCTTCGTCTTTTGCCAG                         GTGTTCAATGTAGATC
genomic: CCACAGCCGTTCTTAACACAGTCATCTTCAACTCCTTCGTCTTTTGCCAGgtaccattcg ... gtacaaacagGTGTTCAATG-AGATC
EST: gi|125207953|gb|EL222907.1|EL222907
EST:     TCATCTTCAACTCCTTCGTCTTTTGCCAG                         GTGTTCAATGAGATCAATAGCCGGGAAATAGAGAAGATAAATGTGTTCAAA
genomic: TCATCTTCAACTCCTTCGTCTTTTGCCAGgtaccattcg ... gtacaaacagGTGTTCAATGAGATCAATAGCCGGGAAATAGAGAAGATAAATGTGTTCAAA
EST: gi|124757855|gb|EH847985.1|EH847985
EST:     CCACAGCCGTTCTTAACACAGTCATCTTCAACTCCTTCGTCTTTTGCCAG                         GTGTTCAATGAGATCAATAGCCGGGAAATAGAGAAGA
genomic: CCACAGCCGTTCTTAACACAGTCATCTTCAACTCCTTCGTCTTTTGCCAGgtaccattcg ... gtacaaacagGTGTTCAATGAGATCAATAGCCGGGAAATAGAGAAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acccaactcttatataaaagataagtaacaagagaatcaaacggtgtacaaacagGTGTTCAATGAGATCAATAGCCGGGAAATAGAGAAGATAAATGTGTTCAAAGGAATGTTCAATAGCTGGGTGTTCACTTGGGTAATGACTGTGACGGTAG
                      aagtaac  putative branch site (score: 2)
         ttatataaaagataag  TA-rich tract