Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgaaataatatttctttgttaggtattatacaggtatcttagcttatctctcttcatttattcctttggctttggcagATTTGCAGCTGCACTAAATGATCATAAACTCGATTGCTGGGTTCTAAGCGTGGTTCCTGTCAGTGGGCCTAACACATTGCCTGTCATTTATGACCGTGGA

Basic information

species Arabidopsis thaliana
transcript AT2G39750.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G39750.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA18G03890.2 (Glycine max), 3'ss of exon 6
-----------gtatgaaataatatttctttgttaggtattatacaggtatcttagcttatctctcttca---tttattcctttggctttggcagATTTGCAGCTGCACTAAATGATCATAAACTCGATTGCTGGGTTCTAAGCGTGGTTCCTGTCAGTGGGCCTAACACATTGCCTGTCATTTATGACCGTGGA
           || | |  || | | |  || | |  |   ||  ||| || ||    |     ||||||   || | |   |||  ||| ||||||||||||| ||| | | | |||| || || ||  |||||||| | |  ||||||||||| ||||| || ||||| |||||||| || ||||||||||||
gtattgtttttgtcttatttactttcttgttataaatttgcatttaggaattttcctatgagaatcttcaatcttcaatatattgagttttgcagATTTGCAGCAGCATTGATTAATCAGAATCTTGACAGCTGGGTTATGAATGTGGTTCCTGTTAGTGGCCCAAACACCTTGCCTGTTATATATGACCGTGGA

upper sequence: AT2G39750.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA11G34430.1 (Glycine max), 3'ss of exon 6
-------------gtatgaaataat---atttctttgttaggtatta---tacaggtatcttagcttatctctcttcatttattcctttggctttggcagATTTGCAGCTGCACTAAATGATCATAAACTCGATTGCTGGGTTCTAAGCGTGGTTCCTGTCAGTGGGCCTAACACATTGCCTGTCATTTATGACCGTGGA
             ||| ||| |  |   | ||  ||||||   |||    |  ||| || ||    |     |||||| |   |      | ||| ||||||||||||| ||| | | |||||| || || ||  |||||||| | |  ||||||||||| ||||| || ||||| |||||||| || ||||||||||| 
tctgggcaatggggtacgaagtttttttactttcttgttataaatttgcttttaggaattttcctatgagaatcttcaatatatttgagtgtttttgcagATTTGCAGCAGCATTGATTGATCAGAATCTTGACAGCTGGGTTATGAATGTGGTTCCTGTTAGTGGTCCAAACACCTTGCCTGTTATATATGACCGTGGG

upper sequence: AT2G39750.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA02G41770.1 (Glycine max), 3'ss of exon 6
---------gtatgaaataatatttctttgttaggtatta-tacaggtatcttagcttatctctcttcatttattcctttggctttggcagATTTGCAGCTGCACTAAATGATCATAAACTCGATTGCTGGGTTCTAAGCGTGGTTCCTGTCAGTGGGCCTAACACATTGCCTGTCATTTATGACCGTGGA
          |||   ||    ||||||  |    ||| | |   ||  | |  | |||    | || || ||||    ||  ||  ||||||||||||||||| | | |||||| |   | ||  | |||||| | |  ||||||||||| ||||| || || || ||||||||||| ||||||||||| 
gtattgtctttatcctattccctttcttgttataatatgaatttgggattttctgattagtatttttaatatatttgagtgcttt--gcagATTTGCAGCTGCATTGATTGATCAGAGTATGGACAGTTGGGTTATGAATGTGGTTCCTGTTAGTGGTCCAAATACCTTGCCTGTCATATATGACCGTGGG

upper sequence: AT2G39750.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: Vv13s0019g02250.t01 (Vitis vinifera), 3'ss of exon 6
----------------------------------gtatgaaataatatttctttgt--taggtattatacaggtatcttagcttatctctcttcatttattcctttggctttggcagATTTGCAGCTGCACTAAATGATCATAAACTCGATTGCTGGGTTCTAAGCGTGGTTCCTGTCAGTGGGCCTAACACATTGCCTGTCATTTATGACCGTGGA
                                   | | |  || |   |  | ||  | | | |  | ||  |   |||    || | | |    ||| |    ||| |||||||||||||| |||||| | |  ||    ||| | |||||||||||||| |  || |||||||| || ||||| || || ||||||||||| ||||| ||||||
gtaccctattcatctcaagcttgttccatttcaattttcatttattgccttgtggtccttgttgtgcttcatttgaattactccatatttttatggttaatttcatggttttggcagATTTGCTGCTGCATTGACCGAAAGAAAAGTTGATTGCTGGGTTCTTAATGTTGTTCCTGTGAGCGGGCCCAATACCTTGCCTGTCATATATGATCGTGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattatacaggtatcttagcttatctctcttcatttattcctttggctttggcagATTTGCAGCTGCACTAAATGATCATAAACTCGATTGCTGGGTTCTAAGCGTGGTTCCTGTCAGTGGGCCTAACACATTGCCTGTCATTTATGACCGTGGA
                       tctctcttcatttatt  CT-rich tract
                             ttcatttatt  TA-rich tract