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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttctttcatctttctttttttttctcgatgaatcaaacgacaatttcggtttggtttcttgtcattattgatcttccctcctcttcaccatcttgttttcctcgaccccatcatgttgattatagatcgtcaaataatggattttaccaatccctataaatcttgcagGAGAAGTTTTGCCGAGCTACTGAGTTTGCGCATGAGACACACGGCTTCTATAAGACCATTGAGGAATTGTGGGACGGTGAAATTTGAGATAATGTCCCTC

Basic information

species Arabidopsis thaliana
transcript AT2G37760.5
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116412485|gb|EG455077.1|EG455077
EST:     GTCCATACCGGAAGATCTGTTTACCAAGTTCTCTAACATTCCCCAGG-A-                         GA-A-GTTTTGCCGAGCTACTGAGTTTGCGCATGAGACACACGGCTTCTAT
genomic: GTCCATACCGGAAGATCTGTTTACCAAGTTCTCTAACATTCCCCAGGCAAgttctttcat ... aatcttgcagGAGAAGTTTTGCCGAGCTACTGAGTTTGCGCATGAGACACACGGCTTCTAT
EST: gi|116448013|gb|EG490605.1|EG490605
EST:     GTCCATACCGGAAGATCTGTTTACCAAGTTCTCTAACATTCCCTAGG-A-                         GA-A-GTTTTGCCGAGCTACTGAGTTTGCGCATGAGACACACGGCTTCTAT
genomic: GTCCATACCGGAAGATCTGTTTACCAAGTTCTCTAACATTCCCCAGGCAAgttctttcat ... aatcttgcagGAGAAGTTTTGCCGAGCTACTGAGTTTGCGCATGAGACACACGGCTTCTAT
EST: gi|86075489|gb|DR371246.1|DR371246
EST:     GTCCATACCGGAAGATCTGTTTACCAAGTTCTCTAACATTCCCCAGG-A-                         GA-A-GTTTTGCCGAGCTACTGAGTTTGCGCATGAGACACACGGCTTCTAT
genomic: GTCCATACCGGAAGATCTGTTTACCAAGTTCTCTAACATTCCCCAGGCAAgttctttcat ... aatcttgcagGAGAAGTTTTGCCGAGCTACTGAGTTTGCGCATGAGACACACGGCTTCTAT
EST: gi|86075291|gb|DR371048.1|DR371048
EST:     GTCCATACCGGAAGATCTGTTTACCAAGTTCTCTAACATTCCCCAGG-A-                         GA-A-GTTTTGCCGAGCTACTGAGTTTGCGCATGAGACACACGGCTTCTAT
genomic: GTCCATACCGGAAGATCTGTTTACCAAGTTCTCTAACATTCCCCAGGCAAgttctttcat ... aatcttgcagGAGAAGTTTTGCCGAGCTACTGAGTTTGCGCATGAGACACACGGCTTCTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttgattatagatcgtcaaataatggattttaccaatccctataaatcttgcagGAGAAGTTTTGCCGAGCTACTGAGTTTGCGCATGAGACACACGGCTTCTATAAGACCATTGAGGAATTGTGGGACGGTGAAATTTGAGATAATGTCCCTC
 tgttgat  putative branch site (score: 4)
                  aaataatggatttta  TA-rich tract