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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtatacttacaaattccaaaatttactctgtttttgcaagtatgaattaacgaagatgccttttcatctgttttggattgatgatagGGTTACTCTCCTTTGGGTTCCCAAAGTAAGGGAGAAGTCAGGCTAAAGGTTCTTCAAAACCCGATTGTTACCGAGGTTGCTGAGAAACTTGGAAAGACCA

Basic information

species Arabidopsis thaliana
transcript AT2G37760.2
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86075291|gb|DR371048.1|DR371048
EST:     AGCAACAAGGTCTTCATGAGTTATGCAAATCCAAAGGAGTTCACTTATCT                         GGTTACTCTCCTTTGGGTTCCCAAAGTAAGGGAGAAGTCAGGCTAAAGGTT
genomic: AGCAACAAGGTCTTCATGAGTTATGCAAATCCAAAGGAGTTCACTTATCTgtgagtatac ... ttgatgatagGGTTACTCTCCTTTGGGTTCCCAAAGTAAGGGAGAAGTCAGGCTAAAGGTT
EST: gi|86075489|gb|DR371246.1|DR371246
EST:     AGCAACAAGGTCTTCATGAGTTATGCAAATCCAAAGGAGTTCACTTATCT                         GGTTACTCTCCTTTGGGTTCCCAAAGTAAGGGAGAAGTCAGGCTAAAGGTT
genomic: AGCAACAAGGTCTTCATGAGTTATGCAAATCCAAAGGAGTTCACTTATCTgtgagtatac ... ttgatgatagGGTTACTCTCCTTTGGGTTCCCAAAGTAAGGGAGAAGTCAGGCTAAAGGTT
EST: gi|125246434|gb|EL260519.1|EL260519
EST:     AGCAACAAGGTCTTCATGAGTTATGCAAATCCAAAGGAGTTCACTTATCT                         GGTTACTCTCCTTTGGGTTCC
genomic: AGCAACAAGGTCTTCATGAGTTATGCAAATCCAAAGGAGTTCACTTATCTgtgagtatac ... ttgatgatagGGTTACTCTCCTTTGGGTTCC
EST: gi|47830253|gb|CK119937.1|CK119937
EST:     AGCAACAAGGTCTTCATGAGTTATGCAAATCCAAAGGAGTTCACTTATCT                         GGTTACTCTCCTTTGGGTTCCCAAAGTAAGGGAGAAGTCAGGCTAAAGGTT
genomic: AGCAACAAGGTCTTCATGAGTTATGCAAATCCAAAGGAGTTCACTTATCTgtgagtatac ... ttgatgatagGGTTACTCTCCTTTGGGTTCCCAAAGTAAGGGAGAAGTCAGGCTAAAGGTT
EST: gi|116412485|gb|EG455077.1|EG455077
EST:     AGCAACAAGGTCTTCATGAGTTATGCAAATCCAAAGGAGTTCACTTATCT                         GGTTACTCTCCTTTGGGTTCCCAAAGTAAGGGAGAAGTCAGGCTAAAGGTT
genomic: AGCAACAAGGTCTTCATGAGTTATGCAAATCCAAAGGAGTTCACTTATCTgtgagtatac ... ttgatgatagGGTTACTCTCCTTTGGGTTCCCAAAGTAAGGGAGAAGTCAGGCTAAAGGTT
EST: gi|116448013|gb|EG490605.1|EG490605
EST:     AGCAACAAGGTCTTCATGAGTTATGCAAATCCAAAGGAGTTCACTTATCT                         GGTTACTCTCCTTTGGGTTCCCAAAGTAAGGGAGAAGTCAGGCTAAAGGTT
genomic: AGCAACAAGGTCTTCATGAGTTATGCAAATCCAAAGGAGTTCACTTATCTgtgagtatac ... ttgatgatagGGTTACTCTCCTTTGGGTTCCCAAAGTAAGGGAGAAGTCAGGCTAAAGGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgcaagtatgaattaacgaagatgccttttcatctgttttggattgatgatagGGTTACTCTCCTTTGGGTTCCCAAAGTAAGGGAGAAGTCAGGCTAAAGGTTCTTCAAAACCCGATTGTTACCGAGGTTGCTGAGAAACTTGGAAAGACCA
        tatgaattaa  TA-rich tract