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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgtgttcattatgaccaaaagggcttcgtaaactgcataatccatcaacagttaccatatcttttaaaccagttttgcttctcctaatccatggtgtttattatttgagcagGCATTGCAGCTTGAGGAGGCAAAATTCAAAGCTCTTGACCTGGCCTCAAAGCCCGAGGGAACAGGCACCCCAACAAAGGATTTCAAGGCGCTTTTCACTC

Basic information

species Arabidopsis thaliana
transcript AT2G37660.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86076409|gb|DR372166.1|DR372166
EST:     CAGAAACAAGAACAATCGCAAGAGCTGATGTTGCAGAAGTCTGTGTTCAG                         GCATTGCAGCTTGAGGAGGCAAAATTCAAAGCTCTTGACCTGGCCTCAAAG
genomic: CAGAAACAAGAACAATCGCAAGAGCTGATGTTGCAGAAGTCTGTGTTCAGgtgtgtgttc ... atttgagcagGCATTGCAGCTTGAGGAGGCAAAATTCAAAGCTCTTGACCTGGCCTCAAAG
EST: gi|125204337|gb|EL219291.1|EL219291
EST:     AAGAGCTGATGTTGCAGAAGTCTGTGTTCAG                         GCATTGCAGCTTGAGGAGGCAAAATTCAAAGCTCTTGACCTGGCCTCAAAG
genomic: AAGAGCTGATGTTGCAGAAGTCTGTGTTCAGgtgtgtgttc ... atttgagcagGCATTGCAGCTTGAGGAGGCAAAATTCAAAGCTCTTGACCTGGCCTCAAAG
EST: gi|124946600|gb|EL022507.1|EL022507
EST:     AGAAACAAGAACAATTCGCAAGAGCTGATGTTGCAGAAGTCTGTGTTCAG                         GCATTGCAGCTTGAGGAGGCAAA
genomic: AGAAACAAGAACAA-TCGCAAGAGCTGATGTTGCAGAAGTCTGTGTTCAGgtgtgtgttc ... atttgagcagGCATTGCAGCTTGAGGAGGCAAA
EST: gi|47831378|gb|CK121062.1|CK121062
EST:     CAGAAACAAGAACAATCGCAAGAGCTGATGTTGCAGAAGTCTGTGTTCAG                         GCATTGCAGCTTGAGGAGGCAAAATTCAAAGCTCTTGACCTGGCCTCAAAG
genomic: CAGAAACAAGAACAATCGCAAGAGCTGATGTTGCAGAAGTCTGTGTTCAGgtgtgtgttc ... atttgagcagGCATTGCAGCTTGAGGAGGCAAAATTCAAAGCTCTTGACCTGGCCTCAAAG
EST: gi|125193211|gb|EL208165.1|EL208165
EST:     CAGAAACAAGAACAATCGCAAGAGCTGATGTTGCAGAAGTCTGTGTTCAG                         GCATTGCAGCTTGA
genomic: CAGAAACAAGAACAATCGCAAGAGCTGATGTTGCAGAAGTCTGTGTTCAGgtgtgtgttc ... atttgagcagGCATTGCAGCTTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatcttttaaaccagttttgcttctcctaatccatggtgtttattatttgagcagGCATTGCAGCTTGAGGAGGCAAAATTCAAAGCTCTTGACCTGGCCTCAAAGCCCGAGGGAACAGGCACCCCAACAAAGGATTTCAAGGCGCTTTTCACTC
                        tcctaat  putative branch site (score: 2)
                                     tgtttattatttga  TA-rich tract