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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcttttggtgtctttcattcccatgtctcccgcgaaacttcgtatctttcaacactgttaccgtttgtttctttaccgttgtagCTACTTAAAGTGAAGCCAGAGGAAGTGTTAATTGAGTCAACTGGTGTTATCGGTCAGAGAATAAAAAAG

Basic information

species Arabidopsis thaliana
transcript AT2G37500.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G37500.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA10G05090.1 (Glycine max), 3'ss of exon 5
----gtatgcttttggtgtctttcattcccatgtctcccgcgaaac--ttcgtatctttcaacactgttaccgtttgtt-----tctttaccgttgtagCTACTTAAAGTGAAGCCAGAGGAAGTGTTAATTGAGTCAACTGGTGTTATCGGTCAGAGAATAAAAAAG
    | || ||||   ||| |   | |    ||  |   | |   |  || | |    |    |||  ||   |||| |     | || |   ||| ||||| | |||||||||||||| ||||| ||||||||||| |||||||| || ||||| ||||||||||||
gtatgcatcctttcattgtgtcaaactgatttgcttatagtgctccctttagaaagagttggtact--tagtatttgctgcaaatgttcataattgcagCTATTGAAAGTGAAGCCAGAAGAAGTATTAATTGAGTCCACTGGTGTAATTGGTCAAAGAATAAAAAAG

upper sequence: AT2G37500.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA13G19450.1 (Glycine max), 3'ss of exon 6
----gtatgcttttggtgtctttcattcccatgtctcccgcgaaacttcgtatctttcaacactg-ttaccgtttgtt-----tctttaccgttgtagCTACTTAAAGTGAAGCCAGAGGAAGTGTTAATTGAGTCAACTGGTGTTATCGGTCAGAGAATAAAAAAG
    | ||  |||   ||| ||  | |    |   |         |   |||  ||      ||  |||   |||| |     | || |   ||| ||||| | |||||||||||||| ||||| |||||||| || |||||||| || ||||| ||||||||||||
gtatgcatcatttcattgtgttaaactgattttgattatagtgctccatgtagattgagttgctacttagtatttgctgcaaatgttcataattgcagCTATTGAAAGTGAAGCCAGAAGAAGTATTAATTGAATCCACTGGTGTAATTGGTCAAAGAATAAAAAAG

upper sequence: AT2G37500.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: Vv08s0040g03320.t01 (Vitis vinifera), 3'ss of exon 6
-----------gtatgcttttggtgtctttcattcccatgtctcccgc----gaaact----tcgtatctttcaacactgttaccgtttgtttctttaccgttgtagCTACTTAAAGTGAAGCCAGAGGAAGTGTTAATTGAGTCAACTGGTGTTATCGGTCAGAGAATAAAAAAG
             | ||| || |  |   ||| | | |  | | | |     ||  ||    | || | ||||     |  |  |  |  ||  |  || |||| |||||||  || ||| ||||||||||||||| || || || ||||||||||| ||||| |||||||| |||
gtgaacaaacatcaggctgttag-atgcctcagttcgacttgttctgttgtagaggctggagttgtttgtttcttttttactttctatgattgttccactgttgcagCTACTGCAAATGAGGCCAGAGGAAGTGTTGATCGAATCTACTGGTGTTATTGGTCATAGAATAAAGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccgcgaaacttcgtatctttcaacactgttaccgtttgtttctttaccgttgtagCTACTTAAAGTGAAGCCAGAGGAAGTGTTAATTGAGTCAACTGGTGTTATCGGTCAGAGAATAAAAAAG
                                  tttgtttctttacc  CT-rich tract
                                      tttcttta  TA-rich tract