1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtagagtgacttctacttagcatattataattaggtaaccaaaatgttctgcttttgtggtctcagactctcagtagcttctgtggcattattatagGCTGCTATGAAGATACTAGAGTCTTACATGGAAGGATACCGCCAAGACTGGAAACTCTCGTTTATGAAAGATACAGTTGAAAGAGGCGGCTG
species | Arabidopsis thaliana |
transcript | AT2G37240.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTACATTTACACCCAAA GCTGCTATGAAGATACTAGAGTCTTACATGGAAGGATACCGCCAAGACTGGEST: gi|116467378|gb|EG509970.1|EG509970
genomic: TTACATTTACACCCAAAgtagagtgac ... attattatagGCTGCTATGAAGATACTAGAGTCTTACATGGAAGGATACCGCCAAGACTGG
EST: ACGAGGCGCTTGAGTTCGTTTCAGGGGTTTCTGTTACATTTACACCCAAA GCTGCTATGAAGATACTAGAGTCTTACATGGAAGGATACCGCCAAGACTGGEST: gi|125053773|gb|EL124751.1|EL124751
genomic: ACGAGGCGCTTGAGTTCGTTTCAGGGGTTTCTGTTACATTTACACCCAAAgtagagtgac ... attattatagGCTGCTATGAAGATACTAGAGTCTTACATGGAAGGATACCGCCAAGACTGG
EST: CATTTACACCCAAA GCTGCTATGAAGATACTAGAGTCTTACATGGAAGGATACCGCCAAGACTGGEST: gi|116467371|gb|EG509963.1|EG509963
genomic: CATTTACACCCAAAgtagagtgac ... attattatagGCTGCTATGAAGATACTAGAGTCTTACATGGAAGGATACCGCCAAGACTGG
EST: ACGAGGCGCTTGAGTTCGTTTCAGGGGTTTCTGTTACATTTACACCCAAA GCTGCTATGAAGATACTAGAGTCTTACATGGAAGGATACCGCCAAGACTGG
genomic: ACGAGGCGCTTGAGTTCGTTTCAGGGGTTTCTGTTACATTTACACCCAAAgtagagtgac ... attattatagGCTGCTATGAAGATACTAGAGTCTTACATGGAAGGATACCGCCAAGACTGG
aatgttctgcttttgtggtctcagactctcagtagcttctgtggcattattatagGCTGCTATGAAGATACTAGAGTCTTACATGGAAGGATACCGCCAAGACTGGAAACTCTCGTTTATGAAAGATACAGTTGAAAGAGGCGGCTG
attattata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagagtgacttctacttagcatattataattaggtaaccaaaatgttctgcttttgtggtctcagactctcagtagcttctgtggcattattatagGCTGCTATGAAGATACTAGAGTCTTACATGGAAGGATACCGCCAAGACTGGAAACTCTCGTTTATGAAAGATACAGTTGAAAGAGGCGGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG