1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagtcatacatatctctaactgctcttctttctccatttgcgatggttacataaaaaaaaaatcgattttgacatgtgacagGTATGAAGTACGACCTAAGAAGAGTGGAAGAAGTTTACTATGATGTCAAGATCCGAGGTTTGATTTCCGGCGGAGATCCTCCTGGCGTCCAAGCAGTCCA
species | Arabidopsis thaliana |
transcript | AT2G37020.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTTTCGCATGCTCAATCTCAGGAACGATTTCCTGCGCAAGAAATTCGACA GTATGAAGTACGACCTAAGAAGAGTGGAAGAAGTTTACTATGATGTCAAGAEST: gi|116444079|gb|EG486671.1|EG486671
genomic: CTTTCGCATGCTCAATCTCAGGAACGATTTCCTGCGCAAGAAATTCGACAgtaagtcata ... catgtgacagGTATGAAGTACGACCTAAGAAGAGTGGAAGAAGTTTACTATGATGTCAAGA
EST: CTTTCGCATGCTCAATCTCAGGAACGATTTCCTGCGCAAGAAATTCGACA GTATGAAGTACGACCTAAGAAGAGTGGAAGAAGTTTACTATGATGTCAAGAEST: gi|86086716|gb|DR382475.1|DR382475
genomic: CTTTCGCATGCTCAATCTCAGGAACGATTTCCTGCGCAAGAAATTCGACAgtaagtcata ... catgtgacagGTATGAAGTACGACCTAAGAAGAGTGGAAGAAGTTTACTATGATGTCAAGA
EST: CTTTCGCATGNTCAATCTCAGGAACGATTTCCTGCGCAAGAAATTCGACA GTATGAAGTACGACCTAAGAAGAGTGGAAGAAGTTTACTATGATGTCAAGA
genomic: CTTTCGCATGCTCAATCTCAGGAACGATTTCCTGCGCAAGAAATTCGACAgtaagtcata ... catgtgacagGTATGAAGTACGACCTAAGAAGAGTGGAAGAAGTTTACTATGATGTCAAGA
ctttctccatttgcgatggttacataaaaaaaaaatcgattttgacatgtgacagGTATGAAGTACGACCTAAGAAGAGTGGAAGAAGTTTACTATGATGTCAAGATCCGAGGTTTGATTTCCGGCGGAGATCCTCCTGGCGTCCAAGCAGTCCA
ttttgac putative branch site (score: 3)
ttacataaaaaaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtcatacatatctctaactgctcttctttctccatttgcgatggttacataaaaaaaaaatcgattttgacatgtgacagGTATGAAGTACGACCTAAGAAGAGTGGAAGAAGTTTACTATGATGTCAAGATCCGAGGTTTGATTTCCGGCGGAGATCCTCCTGGCGTCCAAGCAGTCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC