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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaagaagcttctcccctcatctcctttagcattctggatatcacaatatagcctgctaaaagaatgtgtctgtttttgatctatttcagATGATGACCTCTTGGAGCTTGGTAACTGCAAGGGGAAACACTCTAAATTGATAAGCGATATGTGCAAATTTTATAGAGATTGGCACGTCAAATCTGATGG

Basic information

species Arabidopsis thaliana
transcript AT2G36310.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116442245|gb|EG484837.1|EG484837
EST:     GGATATCACTGTTGTCGGTATAAACATCACAACCCAACTTAAACTATCAG                         ATGATGACCTCTTGGAGCTTGGTAACTGCGAGGGGAAACACTTTAAATTGA
genomic: GGATATCACTGTTGTCGGTATAAACATCACAACCCAACTTAAACTATCAGgtgaagaagc ... tctatttcagATGATGACCTCTTGGAGCTTGGTAACTGCAAGGGGAAACACTCTAAATTGA
EST: gi|124822384|gb|EH907250.1|EH907250
EST:     GGATATCACTGTTGTCGGTATAAACATCACAACCCAACTTAAACTATCAG                         ATGATGACCTCTTGGAGCTTGGTAA
genomic: GGATATCACTGTTGTCGGTATAAACATCACAACCCAACTTAAACTATCAGgtgaagaagc ... tctatttcagATGATGACCTCTTGGAGCTTGGTAA
EST: gi|86074635|gb|DR370392.1|DR370392
EST:     GATATCACTGTTGTCGGTATAAACATCACAACCCAAACTTAAACTATCAG                         ATGATGACCTCTTGGAGCTTGGTAACTGCAAGGGGAAACACTCTAAATTGA
genomic: GATATCACTGTTGTCGGTATAAACATCACAACCC-AACTTAAACTATCAGgtgaagaagc ... tctatttcagATGATGACCTCTTGGAGCTTGGTAACTGCAAGGGGAAACACTCTAAATTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggatatcacaatatagcctgctaaaagaatgtgtctgtttttgatctatttcagATGATGACCTCTTGGAGCTTGGTAACTGCAAGGGGAAACACTCTAAATTGATAAGCGATATGTGCAAATTTTATAGAGATTGGCACGTCAAATCTGATGG
                                             tctatttc  CT-rich tract
                                      tttttgatctattt  TA-rich tract