1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tatcctcatgagtattgttgagttttaggccatgaaatatcttctcttttgagtgttagagctgaataagttcgatcttttttcatgctttctttcgcagTGCATATTCCATATTCAACGAGGATTTTAGAGAGCTTCCAGGTACATATAATGCAGATCGTATAGACCGGGACATACGAGCAGGCCAGATGTAATGCATA
species | Arabidopsis thaliana |
transcript | AT2G35360.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTTTCAATCATCTTGCTCAATCTTGGTAAACGACAGCCTGGTGATGTTAG TGCATATTCCATATTCAACGAGGATTTTAGAGAGCTTCCAGGTACATATAAEST: gi|116394635|gb|EG437227.1|EG437227
genomic: TTTTCAATCATCTTGCTCAATCTTGGTAAACGACAGCCTGGTGATGTTAGgtatgtacat ... tctttcgcagTGCATATTCCATATTCAACGAGGATTTTAGAGAGCTTCCAGGTACATATAA
EST: TTTTCAATCATCTTGCTCAATCTTGGTAAACGACAGCCTGGTGATGTTAG TGCATATTCCATATTCAACGAGGATTTTAGAGAGCTTCCAGGTACATATAAEST: gi|116394654|gb|EG437246.1|EG437246
genomic: TTTTCAATCATCTTGCTCAATCTTGGTAAACGACAGCCTGGTGATGTTAGgtatgtacat ... tctttcgcagTGCATATTCCATATTCAACGAGGATTTTAGAGAGCTTCCAGGTACATATAA
EST: ACGACAGCCTGGTGATGTTAG TGCATATTCCATATTCAACGAGGATTTTAGAGAGCTTCCAGGTACATATAAEST: gi|116394647|gb|EG437239.1|EG437239
genomic: ACGACAGCCTGGTGATGTTAGgtatgtacat ... tctttcgcagTGCATATTCCATATTCAACGAGGATTTTAGAGAGCTTCCAGGTACATATAA
EST: TTTTCAATCATCTTGCTCAATCTTGGTAAACGACAGCCTGGTGATGTTAG TGCATATTCCATATTCAACGAGGATTTTAGAGAGCTTCCAGGTACATATAAEST: gi|116394640|gb|EG437232.1|EG437232
genomic: TTTTCAATCATCTTGCTCAATCTTGGTAAACGACAGCCTGGTGATGTTAGgtatgtacat ... tctttcgcagTGCATATTCCATATTCAACGAGGATTTTAGAGAGCTTCCAGGTACATATAA
EST: TTTTCAATCATCTTGCTCAATCTTGGTAAACGACAGCCTGGTGATGTTAG TGCATATTCCATATTCAACGAGGATTTTAGAGAGCTTCCAGGTACATATAAEST: gi|116394655|gb|EG437247.1|EG437247
genomic: TTTTCAATCATCTTGCTCAATCTTGGTAAACGACAGCCTGGTGATGTTAGgtatgtacat ... tctttcgcagTGCATATTCCATATTCAACGAGGATTTTAGAGAGCTTCCAGGTACATATAA
EST: TTTTCAATCATCTTGCTCAATCTTGGTAAACGACAGCCTGGTGATGTTAG TGCATATTCCATATTCAACGAGGATTTTAGAGAGCTTCCAGGTACATATAAEST: gi|116394641|gb|EG437233.1|EG437233
genomic: TTTTCAATCATCTTGCTCAATCTTGGTAAACGACAGCCTGGTGATGTTAGgtatgtacat ... tctttcgcagTGCATATTCCATATTCAACGAGGATTTTAGAGAGCTTCCAGGTACATATAA
EST: TTTTCAATCATCTTGCTCAATCTTGGTAAACGACAGCCTGGTGATGTTAG TGCATATTCCATATTCAACGAGGATTTTAGAGAGCTTCCAGGTACATATAAEST: gi|116394634|gb|EG437226.1|EG437226
genomic: TTTTCAATCATCTTGCTCAATCTTGGTAAACGACAGCCTGGTGATGTTAGgtatgtacat ... tctttcgcagTGCATATTCCATATTCAACGAGGATTTTAGAGAGCTTCCAGGTACATATAA
EST: TTTTCAATCATCTTGCTCAATCTTGGTAAACGACAGCCTGGTGATGTTAG TGCATATTCCATATTCAACGAGGATTTTAGAGAGCTTCCAGGTACATATAAEST: gi|116394653|gb|EG437245.1|EG437245
genomic: TTTTCAATCATCTTGCTCAATCTTGGTAAACGACAGCCTGGTGATGTTAGgtatgtacat ... tctttcgcagTGCATATTCCATATTCAACGAGGATTTTAGAGAGCTTCCAGGTACATATAA
EST: TTTTCAATCATCTTGCTCAATCTTGGTAAACGACAGCCTGGTGATGTTAG TGCATATTCCATATTCAACGAGGATTTTAGAGAGCTTCCAGGTACATATAAEST: gi|116394642|gb|EG437234.1|EG437234
genomic: TTTTCAATCATCTTGCTCAATCTTGGTAAACGACAGCCTGGTGATGTTAGgtatgtacat ... tctttcgcagTGCATATTCCATATTCAACGAGGATTTTAGAGAGCTTCCAGGTACATATAA
EST: TTTTCAATCATCTTGCTCAATCTTGGTAAACGACAGCCTGGTGATGTTAG TGCATATTCCATATTCAACGAGGATTTTAGAGAGCTTCCAGGTACATATAAEST: gi|124715483|gb|EH806885.1|EH806885
genomic: TTTTCAATCATCTTGCTCAATCTTGGTAAACGACAGCCTGGTGATGTTAGgtatgtacat ... tctttcgcagTGCATATTCCATATTCAACGAGGATTTTAGAGAGCTTCCAGGTACATATAA
EST: TTTTCAATCATCTTGCTCAATCTTGGTAAACGACAGCCTGGTGATGTTAG TGCATATTCCATATTCAACGAGGEST: gi|116394656|gb|EG437248.1|EG437248
genomic: TTTTCAATCATCTTGCTCAATCTTGGTAAACGACAGCCTGGTGATGTTAGgtatgtacat ... tctttcgcagTGCATATTCCATATTCAACGAGG
EST: TTTTCAATCATCTTGCTCAATCTTGGTAAACGACAGCCTGGTGATGTTAG TGCATATTCCATATTCAACGAGGATTTTAGAGAGCTTCCAGGTACATATAAEST: gi|116394643|gb|EG437235.1|EG437235
genomic: TTTTCAATCATCTTGCTCAATCTTGGTAAACGACAGCCTGGTGATGTTAGgtatgtacat ... tctttcgcagTGCATATTCCATATTCAACGAGGATTTTAGAGAGCTTCCAGGTACATATAA
EST: TTTTCAATCATCTTGCTCAATCTTGGTAAACGACAGCCTGGTGATGTTAG TGCATATTCCATATTCAACGAGGATTTTAGAGAGCTTCCAGGTACATATAAEST: gi|116394650|gb|EG437242.1|EG437242
genomic: TTTTCAATCATCTTGCTCAATCTTGGTAAACGACAGCCTGGTGATGTTAGgtatgtacat ... tctttcgcagTGCATATTCCATATTCAACGAGGATTTTAGAGAGCTTCCAGGTACATATAA
EST: TTTTCAATCATCTTGCTCAATCTTGGTAAACGACAGCCTGGTGATGTTAG TGCATATTCCATATTCAACGAGGATTTTAGAGAGCTTCCAGGTACATATAAEST: gi|116394651|gb|EG437243.1|EG437243
genomic: TTTTCAATCATCTTGCTCAATCTTGGTAAACGACAGCCTGGTGATGTTAGgtatgtacat ... tctttcgcagTGCATATTCCATATTCAACGAGGATTTTAGAGAGCTTCCAGGTACATATAA
EST: TTTTCAATCATCTTGCTCAATCTTGGTAAACGACAGCCTGGTGATGTTAG TGCATATTCCATATTCAACGAGGATTTTAGAGAGCTTCCAGGTACATATAAEST: gi|116394652|gb|EG437244.1|EG437244
genomic: TTTTCAATCATCTTGCTCAATCTTGGTAAACGACAGCCTGGTGATGTTAGgtatgtacat ... tctttcgcagTGCATATTCCATATTCAACGAGGATTTTAGAGAGCTTCCAGGTACATATAA
EST: TTTTCAATCATCTTGCTCAATCTTGGTAAACGACAGCCTGGTGATGTTAG TGCATATTCCATATTCAACGAGGATTTTAGAGAGCTTCCAGGTACATATAAEST: gi|116394644|gb|EG437236.1|EG437236
genomic: TTTTCAATCATCTTGCTCAATCTTGGTAAACGACAGCCTGGTGATGTTAGgtatgtacat ... tctttcgcagTGCATATTCCATATTCAACGAGGATTTTAGAGAGCTTCCAGGTACATATAA
EST: TTTTCAATCATCTTGCTCAATCTTGGTAAACGACAGCCTGGTGATGTTAG TGCATATTCCATATTCAACGAGGATTTTAGAGAGCTTCCAGGTACATATAAEST: gi|116394645|gb|EG437237.1|EG437237
genomic: TTTTCAATCATCTTGCTCAATCTTGGTAAACGACAGCCTGGTGATGTTAGgtatgtacat ... tctttcgcagTGCATATTCCATATTCAACGAGGATTTTAGAGAGCTTCCAGGTACATATAA
EST: TTTTCAATCATCTTGCTCAATCTTGGTAAACGACAGCCTGGTGATGTTAG TGCATATTCCATATTCAACGAGGATTTTAGAGAGCTTCCAGGTACATATAAEST: gi|116394636|gb|EG437228.1|EG437228
genomic: TTTTCAATCATCTTGCTCAATCTTGGTAAACGACAGCCTGGTGATGTTAGgtatgtacat ... tctttcgcagTGCATATTCCATATTCAACGAGGATTTTAGAGAGCTTCCAGGTACATATAA
EST: TTTTCAATCATCTTGCTCAATCTTGGTAAACGACAGCCTGGTGATGTTAG TGCATATTCCATATTCAACGAGGATTTTAGAGAGCTTCCAGGTACATATAA
genomic: TTTTCAATCATCTTGCTCAATCTTGGTAAACGACAGCCTGGTGATGTTAGgtatgtacat ... tctttcgcagTGCATATTCCATATTCAACGAGGATTTTAGAGAGCTTCCAGGTACATATAA
cttttgagtgttagagctgaataagttcgatcttttttcatgctttctttcgcagTGCATATTCCATATTCAACGAGGATTTTAGAGAGCTTCCAGGTACATATAATGCAGATCGTATAGACCGGGACATACGAGCAGGCCAGATGTAATGCATA
tcttttttcatgcttt CT-rich tract
atctttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatcctcatgagtattgttgagttttaggccatgaaatatcttctcttttgagtgttagagctgaataagttcgatcttttttcatgctttctttcgcagTGCATATTCCATATTCAACGAGGATTTTAGAGAGCTTCCAGGTACATATAATGCAGATCGTATAGACCGGGACATACGAGCAGGCCAGATGTAATGCATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
-atcctca
- - - - - - - - - - -gttttag
- - - - - - - - - - - - - - - catgaaa
- - - - - - - - - - - - - - - - - - - - cttctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaataag