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gtgagtctttctttttggtaaattttggacaatttagttgtaagctcatactggcgataaactcatacgaaactatcttaccgccttgcagTCGATAGTGATATATGTGGAGAGCTTATTAAAATTGGAGAATAGCTCAATAGGGCAAGTTGGTGGCAGCATGATTCTTGGTATGGTGATGGAGAGGCTGC
species | Arabidopsis thaliana |
transcript | AT2G34750.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CACAAAAAGGACCAT TCGATAGTGATATATGTGGAGAGCTTATTAAAATTGGAGAATAGCTCAATAEST: gi|125221786|gb|EL235871.1|EL235871
genomic: CACAAAAAGGACCATgtgagtcttt ... cgccttgcagTCGATAGTGATATATGTGGAGAGCTTATTAAAATTGGAGAATAGCTCAATA
EST: TGCACAAAAAGGACCAT TCGATAGTGATATATGTGGAGAGCTTATTAAAATTGGAGAATAGCTCAATA
genomic: TGCACAAAAAGGACCATgtgagtcttt ... cgccttgcagTCGATAGTGATATATGTGGAGAGCTTATTAAAATTGGAGAATAGCTCAATA
gttgtaagctcatactggcgataaactcatacgaaactatcttaccgccttgcagTCGATAGTGATATATGTGGAGAGCTTATTAAAATTGGAGAATAGCTCAATAGGGCAAGTTGGTGGCAGCATGATTCTTGGTATGGTGATGGAGAGGCTGC
atcttac putative branch site (score: 3)
tcttacc CT-rich tract
ataaact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtctttctttttggtaaattttggacaatttagttgtaagctcatactggcgataaactcatacgaaactatcttaccgccttgcagTCGATAGTGATATATGTGGAGAGCTTATTAAAATTGGAGAATAGCTCAATAGGGCAAGTTGGTGGCAGCATGATTCTTGGTATGGTGATGGAGAGGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG