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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggattcccaccttgttactttatcaatttaaggaattgcggatttaatttgctctgaatgaatatgtgttgcagGAACTAGAAGATCCTCTCATTCTTATCCACGAGAAGAAAATTTCCAATATAAACGCAATGGTGAAAGTATTAGAACTGGCCCTCAAG

Basic information

species Arabidopsis thaliana
transcript AT2G33210.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G33210.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: Vv05s0051g00340.t01 (Vitis vinifera), 3'ss of exon 7
---------------------------------------------------------------------------gtaagga-ttcccaccttgttactttatcaatttaaggaattgcgg---atttaatttgctctgaatgaa------tatgtgttgcagGAACTAGAAGATCCTCTCATTCTTATCCACGAGAAGAAAATTTCCAATATAAACGCAATGGTGAAAGTATTAGAACTGGCCCTCAAG
                                                                           | ||| |  |      |   |   |      |||||| ||   |      || | ||    |||| ||        ||| |  | |||||||||||| |||||||  |||| ||||| ||||||||||| || |||||| | ||  | ||||||||  ||||  ||||  | |||
gtaagtttttttttccttgtgactcgtttgattgacatatgtctggatgctgttacttcataattgaagtaatatgaaagaagcttatgtttcagtcactagctggtttaagtaacatcaacttgttcacttaaaactgagtgtccatatctatatactacagGAACTAGAAAATCCTCTTGTTCTAATCCATGAGAAGAAAATCTCGAATATACATGCTGTTGTGAAAGTGCTAGAGATGGCATTAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116483327|gb|EG525919.1|EG525919
EST:     GGGGATACATCTCCCCGTACTTCATAACTAACCCGAAAACACAAAAATGT                         GAACTAGAAGATCCTCTCATTCTTATCCACGAGAAGAAAATTTCCAATATA
genomic: GGGGATACATCTCCCCGTACTTCATAACTAACCCGAAAACACAAAAATGTgtaaggattc ... tgtgttgcagGAACTAGAAGATCCTCTCATTCTTATCCACGAGAAGAAAATTTCCAATATA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatcaatttaaggaattgcggatttaatttgctctgaatgaatatgtgttgcagGAACTAGAAGATCCTCTCATTCTTATCCACGAGAAGAAAATTTCCAATATAAACGCAATGGTGAAAGTATTAGAACTGGCCCTCAAG
                      atttaat  putative branch site (score: 4)
                      atttaattt  TA-rich tract