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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttctttaatccattgttatgtaactcataaaaattggatactttgtgtcgattcaagggttttgacacttgatctcagtaacaaagtctttgatgcattgatccgtttagtgtaactctgcgttttgattcacgtgactcatcgcgtcatatttctctttacagGTTGGTGAAGTTCCTGGAAAACACTACAAGGAACATTTGAGTTTTATATCTTGTAAGAATCTATCTGCTGCTCCCAACTCTGTGAGACTGTGACAAACTT

Basic information

species Arabidopsis thaliana
transcript AT2G31955.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164218983|gb|ES204419.1|ES204419
EST:     TAATAGA-CAATGATACACATTGGTGGCTAAGCTCCGGTGAAC                         GTTGGTGAAGTTCCTGGAAAACACTACAAGGAAC
genomic: TAATAGACCAATGATACACATTGGTGGCTAAGCTCCGGTGAACgtaagttctt ... ctctttacagGTTGGTGAAGTTCCTGGAAAACACTACAAGGAAC
EST: gi|164084139|gb|ES178588.1|ES178588
EST:     CTAATAGACCAATGATACACATTGGTGGCTAAGCTCCGGTGAAC                         GTTGGTGAAGTTCCTGGAAA-CACTACAAGGAAC
genomic: CTAATAGACCAATGATACACATTGGTGGCTAAGCTCCGGTGAACgtaagttctt ... ctctttacagGTTGGTGAAGTTCCTGGAAAACACTACAAGGAAC
EST: gi|86079345|gb|DR375102.1|DR375102
EST:     AAACAGCTAATAGACCAATGATACACATTGGTGGCTAAGCTCCGGTGAAC                         GTTGGTGAAGTTCCTGGAAAACACTACAAGGAACATTTGAGTTTTATATCT
genomic: AAACAGCTAATAGACCAATGATACACATTGGTGGCTAAGCTCCGGTGAACgtaagttctt ... ctctttacagGTTGGTGAAGTTCCTGGAAAACACTACAAGGAACATTTGAGTTTTATATCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgtaactctgcgttttgattcacgtgactcatcgcgtcatatttctctttacagGTTGGTGAAGTTCCTGGAAAACACTACAAGGAACATTTGAGTTTTATATCTTGTAAGAATCTATCTGCTGCTCCCAACTCTGTGAGACTGTGACAAACTT
                                     tcatatttctcttt  CT-rich tract
             ttttgatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagttctttaatccattgttatgtaactcataaaaattggatactttgtgtcgattcaagggttttgacacttgatctcagtaacaaagtctttgatgcattgatccgtttagtgtaactctgcgttttgattcacgtgactcatcgcgtcatatttctctttacagGTTGGTGAAGTTCCTGGAAAACACTACAAGGAACATTTGAGTTTTATATCTTGTAAGAATCTATCTGCTGCTCCCAACTCTGTGAGACTGTGACAAACTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT