1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtattcatttttctcaacaaagaacatcgttttcttcctacacgaaggaaaatatggaaattagaaagtacagatatcagcattttaaaaatttggattgtaggcgtcaacaaattgtatgaaatagccatcatacaggttcatttagtgatgaagtaaaaactgaatatgaacatgacaactttgtcttctactgcagTGTGCTTTGTGAAGATCCGAAGCAAGCCGTGGCTGTGAAAAGTCAATTGCAGCAGCTAGCTAGACCAATGTACAGCAACCCACCTTTGCATGGTGCTCAG
species | Arabidopsis thaliana |
transcript | AT2G30970.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TCCTATGCAAAAAACATGGGACTCTACGGCCAGAGGGTGGGATGTCTCAG TGTGCTTTGTGAAGATCCGEST: gi|86044680|gb|DR340435.1|DR340435
genomic: TCCTATGCAAAAAACATGGGACTCTACGGCCAGAGGGTGGGATGTCTCAGgtattcattt ... tctactgcagTGTGCTTTGTGAAGATCCG
EST: TCCTATGCAAAAAACATGGGACTCTACGGCCAGAGGGTGGGATGTCTCAG TGTGCTTTGTGAAGATCCGAAGCAAGCCGTGGCTGTGAAAAGTCAATTGCAEST: gi|124860496|gb|EH944933.1|EH944933
genomic: TCCTATGCAAAAAACATGGGACTCTACGGCCAGAGGGTGGGATGTCTCAGgtattcattt ... tctactgcagTGTGCTTTGTGAAGATCCGAAGCAAGCCGTGGCTGTGAAAAGTCAATTGCA
EST: TCCTATGCAAAAAACATGGGACTCTACGGCCAGAGGGTGGGATGTCTCAG TGTGCTTTGTGAAGATCCGAAGCAAGCCGTGGEST: gi|125098639|gb|EL154707.1|EL154707
genomic: TCCTATGCAAAAAACATGGGACTCTACGGCCAGAGGGTGGGATGTCTCAGgtattcattt ... tctactgcagTGTGCTTTGTGAAGATCCGAAGCAAGCCGTGG
EST: GGGACTCTACGGCCAGTAGGGTGGGATGTCTCAG TGTGCTTTGTGAAGATCCGAAGCAAGCCGTGGCTGTGAAAAGTCAATTGCAEST: gi|86079557|gb|DR375314.1|DR375314
genomic: GGGACTCTACGGCCAG-AGGGTGGGATGTCTCAGgtattcattt ... tctactgcagTGTGCTTTGTGAAGATCCGAAGCAAGCCGTGGCTGTGAAAAGTCAATTGCA
EST: GGATGTCTCAG TGTGCTTTGTGAAGATCCGAAGCAAGCCGTGGCTGTGAAAAGTCAATTGCA
genomic: GGATGTCTCAGgtattcattt ... tctactgcagTGTGCTTTGTGAAGATCCGAAGCAAGCCGTGGCTGTGAAAAGTCAATTGCA
ttagtgatgaagtaaaaactgaatatgaacatgacaactttgtcttctactgcagTGTGCTTTGTGAAGATCCGAAGCAAGCCGTGGCTGTGAAAAGTCAATTGCAGCAGCTAGCTAGACCAATGTACAGCAACCCACCTTTGCATGGTGCTCAG
ctttgtcttctact CT-rich tract
taaaaactgaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattcatttttctcaacaaagaacatcgttttcttcctacacgaaggaaaatatggaaattagaaagtacagatatcagcattttaaaaatttggattgtaggcgtcaacaaattgtatgaaatagccatcatacaggttcatttagtgatgaagtaaaaactgaatatgaacatgacaactttgtcttctactgcagTGTGCTTTGTGAAGATCCGAAGCAAGCCGTGGCTGTGAAAAGTCAATTGCAGCAGCTAGCTAGACCAATGTACAGCAACCCACCTTTGCATGGTGCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT