Sequence
atgc intronic sequence ATGC exonic sequencegtttgtagttttgaaactgaatagttttcgttctattgaatatggttttgaagaatgtgtttcttatcattcctcttttgcagCTTGGAGACTACGCTTAGGAGTTACTCTTGCTTAACCACGGGTGATACAATTATGGTTCCGTATAACAACAAGCAATATTACATCAATGTGGTTGAGGCA
Basic information
species | Arabidopsis thaliana |
transcript | AT2G29070.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G29070.2 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA15G04140.1 (Glycine max), 3'ss of exon 7
gtttgtagttttgaaactgaatagttttcgttctattgaatatggttttgaagaatgtgtttcttatcattcctcttttgcagCTTGGAGACTACGCTTAGGAGTTACTCTTGCTTAACCACGGGTGATACAATTATGGTTCCGTATAACAACAAGCAATATTACATCAATGTGGTTGAGGCA
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gttagtatttctttt-ctaatatctagttatacctttaacagtgtcaattgatattttctttcattctcttgattatttgcagCTTAGAGACTACACTTAGGAGCTACTCATGTTTAACAACTGGTGACACAATAATGGTTCCTTATAACAACAAGAAGTATTACATTGACATAGTTGAAACT
upper sequence: AT2G29070.2 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA13G41280.1 (Glycine max), 3'ss of exon 8
gtttgtagttttgaaactgaatagttttcgttctattgaatatggttttgaagaatgtgtttcttatcattcctcttttgcagCTTGGAGACTACGCTTAGGAGTTACTCTTGCTTAACCACGGGTGATACAATTATGGTTCCGTATAACAACAAGCAATATTACATCAATGTGGTTGAGGCA-------
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gttagtatttcttctataatatc-tagttacacctttgacagtgtcaattgatattttctttcattctcttgattatttgcagcttagagACTACACTTAGGAGCTACTCATGTTTAACAGCCGGTGACACTATAATGGTTCCTTATAACAACAAGAAGTATTACATCGACATAGTTGAAACTATACCCTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86072862|gb|DR368619.1|DR368619EST: CTGCAGCCTCACACTCAAGATTTCTTGGATATTTCCAACCCAAAAGCCAT CTTGGAGACTACGCTTNNNAGTTACTCTTGCTTAACCACGGGTGATACAAT
genomic: CTGCAGCCTCACACTCAAGATTTCTTGGATATTTCCAACCCAAAAGCCATgtttgtagtt ... tcttttgcagCTTGGAGACTACGCTTAGGAGTTACTCTTGCTTAACCACGGGTGATACAAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cgttctattgaatatggttttgaagaatgtgtttcttatcattcctcttttgcagCTTGGAGACTACGCTTAGGAGTTACTCTTGCTTAACCACGGGTGATACAATTATGGTTCCGTATAACAACAAGCAATATTACATCAATGTGGTTGAGGCA
tgtttcttatcattcc CT-rich tract
tattgaatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtttgtagttttgaaactgaatagttttcgttctattgaatatggttttgaagaatgtgtttcttatcattcctcttttgcagCTTGGAGACTACGCTTAGGAGTTACTCTTGCTTAACCACGGGTGATACAATTATGGTTCCGTATAACAACAAGCAATATTACATCAATGTGGTTGAGGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA