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...tctctttatgtgtattacgcatgcttgatagtgacaatacgtagtcaattgcataagacgaaaaggttgaatcaatctaataaattttcctgtgcaccagAGTTTCCTGGTGAAGAAGGACTTGCAGCTGCTATCACGGAGGAGCTGGAAGACATGGCAGAGGATAATACATCATCTAG
species | Arabidopsis thaliana |
transcript | AT2G26590.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGATGCAGAATTGTGCTCTTCAGTCAATCAATACCTCAATCAACCACTAG AGTTTCCTGGTGAAGACGGACTTGCAGCTGCTATCACGGAGGAGCTGGAAGEST: gi|164204402|gb|ES121293.1|ES121293
genomic: TGATGCAGAATTGTGCTCTTCAGTCAATCAATACCTCAATCAACCACTAGgcatgtaaca ... tgtgcaccagAGTTTCCTGGTGAAGAAGGACTTGCAGCTGCTATCACGGAGGAGCTGGAAG
EST: CAATCAACCACTAG AGTTTCCTGGTGAAGAAGGACTTGCAGCTGCTATCACGGAGGAGCTGGAAGEST: gi|86062651|gb|DR358408.1|DR358408
genomic: CAATCAACCACTAGgcatgtaaca ... tgtgcaccagAGTTTCCTGGTGAAGAAGGACTTGCAGCTGCTATCACGGAGGAGCTGGAAG
EST: TGATGCAGAATTGTGCTCTTCAGTCAATCAATACCTCAATCAACCACTAG AGTTTCCTGGTGAAGACGGACTTGCAGCTGCTATCACGGAGGAGCTGGAAGEST: gi|125223088|gb|EL237173.1|EL237173
genomic: TGATGCAGAATTGTGCTCTTCAGTCAATCAATACCTCAATCAACCACTAGgcatgtaaca ... tgtgcaccagAGTTTCCTGGTGAAGAAGGACTTGCAGCTGCTATCACGGAGGAGCTGGAAG
EST: TGATGCAGAATTGTGCTCTTCAGTCAATCAATACCTCAATCAACCACTAG AGTTTCCTGGTGAAEST: gi|86062649|gb|DR358406.1|DR358406
genomic: TGATGCAGAATTGTGCTCTTCAGTCAATCAATACCTCAATCAACCACTAGgcatgtaaca ... tgtgcaccagAGTTTCCTGGTGAA
EST: TGATGCAGAATTGTGCTCTTCAGTCAATCAATACCTCAATCAACCACTAG AGTTTCCTGGTGAAGACGGACTTGCAGCTGCTATCACGGAGGAGCTGGAAGEST: gi|125079858|gb|EL141682.1|EL141682
genomic: TGATGCAGAATTGTGCTCTTCAGTCAATCAATACCTCAATCAACCACTAGgcatgtaaca ... tgtgcaccagAGTTTCCTGGTGAAGAAGGACTTGCAGCTGCTATCACGGAGGAGCTGGAAG
EST: TGATGCAGAATTGTGCTCTTCAGTCAATCAATACCTCAATCAACCACTAG AGTTTCCTGGTGAAGAAGG
genomic: TGATGCAGAATTGTGCTCTTCAGTCAATCAATACCTCAATCAACCACTAGgcatgtaaca ... tgtgcaccagAGTTTCCTGGTGAAGAAGG
caattgcataagacgaaaaggttgaatcaatctaataaattttcctgtgcaccagAGTTTCCTGGTGAAGAAGGACTTGCAGCTGCTATCACGGAGGAGCTGGAAGACATGGCAGAGGATAATACATCATCTAG
atctaat putative branch site (score: 3)
ttttcctgt putative PPT
ttgaatcaatctaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctctttatgtgtattacgcatgcttgatagtgacaatacgtagtcaattgcataagacgaaaaggttgaatcaatctaataaattttcctgtgcaccagAGTTTCCTGGTGAAGAAGGACTTGCAGCTGCTATCACGGAGGAGCTGGAAGACATGGCAGAGGATAATACATCATCTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT