1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gttcgttacatttttactaaatctttgctagagtttaatttgaaattattcgtccagaatggttaatgagtttttttttgtgtgttcccttaatctttcaaatttagGACCCAAAGTTTTGGACATACAGGCCTATGACTGAGCTCATGATCCGCGCAGCTGCTGATGATGTCCGCTTCCTTCTGTATCTCTATCACAAAATGATGG
species | Arabidopsis thaliana |
transcript | AT2G25910.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GTATATCCTATGAAGAGAAAGAAGAAGTTCGAGTTCTCATGCGCCAG GACCCAAAGTTTTGGACATACAGGCCTATGACTGAGCTCATGATCCGCGCAEST: gi|124777598|gb|EH867541.1|EH867541
genomic: GTATATCCTATGAAGAGAAAGAAGAAGTTCGAGTTCTCATGCGCCAGgttcgttaca ... tcaaatttagGACCCAAAGTTTTGGACATACAGGCCTATGACTGAGCTCATGATCCGCGCA
EST: AGAGAAAGAAGAAGTTCGAGTTCTCATGCGCCAG GACCCAAAGTTTTGGACATACAGGCCTATGACTGAGCTCATGATCCGCGCAEST: gi|86035181|gb|DR330934.1|DR330934
genomic: AGAGAAAGAAGAAGTTCGAGTTCTCATGCGCCAGgttcgttaca ... tcaaatttagGACCCAAAGTTTTGGACATACAGGCCTATGACTGAGCTCATGATCCGCGCA
EST: GTATATCCTATGAAGAGAAAGAAGAAGTTCGAGTTCTCATGCGCCAG GACCCAAAGTTTTGGACATACAGGCCTATGACTGAGCTCATGATCCGCGCAEST: gi|86035176|gb|DR330929.1|DR330929
genomic: GTATATCCTATGAAGAGAAAGAAGAAGTTCGAGTTCTCATGCGCCAGgttcgttaca ... tcaaatttagGACCCAAAGTTTTGGACATACAGGCCTATGACTGAGCTCATGATCCGCGCA
EST: GTATATCCTATGAAGAGAAAGAAGAAGTTCGAGTTCTCATGCGCCAG GACCCAAAGTTTTGGACATACAGGCCTATGACTGAGCTCATGATCCGCGCA
genomic: GTATATCCTATGAAGAGAAAGAAGAAGTTCGAGTTCTCATGCGCCAGgttcgttaca ... tcaaatttagGACCCAAAGTTTTGGACATACAGGCCTATGACTGAGCTCATGATCCGCGCA
tccagaatggttaatgagtttttttttgtgtgttcccttaatctttcaaatttagGACCCAAAGTTTTGGACATACAGGCCTATGACTGAGCTCATGATCCGCGCAGCTGCTGATGATGTCCGCTTCCTTCTGTATCTCTATCACAAAATGATGG
ccttaat putative branch site (score: 4)
ttcccttaatctttc CT-rich tract
ttaatgagtttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgttacatttttactaaatctttgctagagtttaatttgaaattattcgtccagaatggttaatgagtttttttttgtgtgttcccttaatctttcaaatttagGACCCAAAGTTTTGGACATACAGGCCTATGACTGAGCTCATGATCCGCGCAGCTGCTGATGATGTCCGCTTCCTTCTGTATCTCTATCACAAAATGATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT