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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtagtctctaaatgtttgctcttccgattagtttgggctgattcatctggaaatctgtattggtttctgttgctaaaaagctttagtttgttttgcatgcacaagacacttttttgctgatgaaaaatctataactatttggtctgagtttcattaaatcgacttaatttagGATCTTCCCGGTGCACTCGATGATGCGGCTGTTACAGAAGCCTTGGAGTTGCATAAGATAAAGAGTCGTCAATGGGCAATCTTCAAAACTTGTGCTGTGA

Basic information

species Arabidopsis thaliana
transcript AT2G24765.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G24765.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: Vv04s0008g07360.t01 (Vitis vinifera), 3'ss of exon 6
gttagtagtctctaaatgtttgctcttccgattagtttgggctgattcatctggaaatctgtattggtttctgttgctaaaaagctttagtttgttttgcatgcacaagacacttttttgctgatgaaaaatctataactatttggtctgagtttcattaaatcgacttaatttagGATCTTCCCGGTGCACTCGATGATGCGGCTGTTACAGAAGCCTTGGAGTTGCATAAGATAAAGAGTCGTCAATGGGCAATCTTCAAAACTTGTGCTGTGA
                                                                      |   ||     |   |||  | || | |  ||| |      |    ||||    |  |  ||  ||  ||  | | || |    ||| |   |  |  ||| |||||||||||| |||||||| |||||||| ||| | |||||||| ||||||||||| |||||||| |  || |||||||| || || |||||||| ||  | |
--------------------------------------------------------------------acccaatgtggtgacaattttctctgctcttgatggaattcttagaactttg---gttcatgattcat--ctgatggttcag---ctcactgttttaatgtaaattagGATCTTCCTGGTGCACTTGATGATGCTGCTTTAACAGAAGCTTTGGAGTTGCACAAGATAAAAAACCGCCAATGGGCTATTTTTAAAACTTGCGCCATAA

upper sequence: AT2G24765.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: Vv11s0052g01720.t01 (Vitis vinifera), 3'ss of exon 7
gttagtagtctctaaatgtttgctcttccgattagtttgggctgattcatctggaaatctgtattggtttctgttgctaaaaagctttagtttgttttgcatgcacaagacacttttttgctgatgaaaaatcta--taactatttggtctgagtttcattaaatcgacttaatttagGATCTTCCCGGTGCACTCGATGATGCGGCTGTTACAGAAGCCTTGGAGTTGCATAAGATAAAGAGTCGTCAATGGGCAATCTTCAAAACTTGTGCTGTGA
                                                                           |||  |   | |   |    |||    ||| ||  | | | | ||    |      | ||  | | | |||  |||   | |  ||    |   |  || ||||||||||| |||||||| |||||||| ||||| || || ||||| |||||||| ||||| || |  |||||||||||||| || ||||||| |||  | |
--------------------------------------------------------------------------agcttca--tcctctatgaactttctgcgcataaatc-catctgtgaaatttgtgtgtttagttgattgttttttctttctcttttttc-cctgttctatatagGATCTTCCTGGTGCACTTGATGATGCTGCTGTGACTGAGGCCTTAGAGTTGCACAAGATTAAAAACCGTCAATGGGCAATTTTTAAAACTTCTGCCATAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125291425|gb|EL305510.1|EL305510
EST:     GAAGATGAATTGAAAGGTGCGGTGGTTCTGATATTTGCAAACAAGACAG                         GATCTTCCCGGTGCACTCGATG
genomic: GAAGATGAATTGAAAGGTGCGGTGGTTCTGATATTTGCAAACAAG-CAGgttagtagtc ... cttaatttagGATCTTCCCGGTGCACTCGATG
EST: gi|125202588|gb|EL217542.1|EL217542
EST:     CAAACAAGCAG                         GATCTTCCCGGTGCACTCGATGATGCGGCTGTTACAGAAGCCTTGGAGTTG
genomic: CAAACAAGCAGgttagtagtc ... cttaatttagGATCTTCCCGGTGCACTCGATGATGCGGCTGTTACAGAAGCCTTGGAGTTG
EST: gi|125024866|gb|EL097135.1|EL097135
EST:     TGATATTTGCAAACAAGCAG                         GATCTTCCCGGTGCACTCGATGATGCGGCTGTTACAGAAGCCTTGGAGTTG
genomic: TGATATTTGCAAACAAGCAGgttagtagtc ... cttaatttagGATCTTCCCGGTGCACTCGATGATGCGGCTGTTACAGAAGCCTTGGAGTTG
EST: gi|125220940|gb|EL235025.1|EL235025
EST:     GAAGATGAATTGAAAGGTGCGGTGGTTCTGATATTTGCAAACAAGCAG                         GATCTTCCCGGTGCACTCGA
genomic: GAAGATGAATTGAAAGGTGCGGTGGTTCTGATATTTGCAAACAAGCAGgttagtagtc ... cttaatttagGATCTTCCCGGTGCACTCGA
EST: gi|164054747|gb|ES009190.1|ES009190
EST:     AGGAAGATGAATTGAAAGGTGCGGTGGTTCTGATATTTGCAAACAAGCAG                         GATCTTCCCGGTGCACTCGATGATGCGGCTGTTACNGAAGCCTTGG
genomic: AGGAAGATGAATTGAAAGGTGCGGTGGTTCTGATATTTGCAAACAAGCAGgttagtagtc ... cttaatttagGATCTTCCCGGTGCACTCGATGATGCGGCTGTTACAGAAGCCTTGG
EST: gi|125024221|gb|EL096490.1|EL096490
EST:     AATTGAAAGGTGCGGTGGTTCTGATATTTGCAAACAAGCAG                         GATCTTCCCGGTGCACTCGATGATGCGGCTGTTACAGAAGCCTTGGAGTTG
genomic: AATTGAAAGGTGCGGTGGTTCTGATATTTGCAAACAAGCAGgttagtagtc ... cttaatttagGATCTTCCCGGTGCACTCGATGATGCGGCTGTTACAGAAGCCTTGGAGTTG
EST: gi|19877752|gb|AU238583.1|AU238583
EST:     GAAGATGAATTGAAAGGTGCGGTGGTTCTGATATTTGCAAACAAGCAG                         GATCTTCCCGGTGCACTCGATGATGCGGCTGTTACAGAAGCCTTGGAGTTG
genomic: GAAGATGAATTGAAAGGTGCGGTGGTTCTGATATTTGCAAACAAGCAGgttagtagtc ... cttaatttagGATCTTCCCGGTGCACTCGATGATGCGGCTGTTACAGAAGCCTTGGAGTTG
EST: gi|164172241|gb|ES066658.1|ES066658
EST:     GAAGATGAATTGAAAGGTGCGGTGGTTCTGATATTTGCAAACAAGCAG                         GATCTTCCCGGTGCAC
genomic: GAAGATGAATTGAAAGGTGCGGTGGTTCTGATATTTGCAAACAAGCAGgttagtagtc ... cttaatttagGATCTTCCCGGTGCAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatgaaaaatctataactatttggtctgagtttcattaaatcgacttaatttagGATCTTCCCGGTGCACTCGATGATGCGGCTGTTACAGAAGCCTTGGAGTTGCATAAGATAAAGAGTCGTCAATGGGCAATCTTCAAAACTTGTGCTGTGA
     aaaaatctataactat  TA-rich tract