1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gttagtttctcccatcagattcttttgaaagctatagtttgttaaccgaactgaacagattcgtcttccacaaccagGTTCATTTCATCGTTGCAGCCTGTGAAAATATGATTAGTGGAACCGGAATGAGACCTGGAGATGTCATCACTGCCTCAAACGGAAAGACCATTGAG
species | Arabidopsis thaliana |
transcript | AT2G24200.3 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GCTGCGAAAGCTATTGGTGAGATTAAGCCTCCTGGTGTTGAG GTTCATTTCATCGTTGCAGCCTGTGAAAATAEST: gi|124771750|gb|EH861880.1|EH861880
genomic: GCTGCGAAAGCTATTGGTGAGATTAAGCCTCCTGGTGTTGAGgttagtttct ... ccacaaccagGTTCATTTCATCGTTGCAGCCTGTGAAAATA
EST: CGCTGCGAAAGCTATTGGTGAGATTAAGCCTCCTGGTGTTGAG GTTCATTTCATCGTTGCAGCCTGTGAAAATATGATTAGTGGAACCGGAATGEST: gi|116409637|gb|EG452229.1|EG452229
genomic: CGCTGCGAAAGCTATTGGTGAGATTAAGCCTCCTGGTGTTGAGgttagtttct ... ccacaaccagGTTCATTTCATCGTTGCAGCCTGTGAAAATATGATTAGTGGAACCGGAATG
EST: TTCTTGGCGCTGCGAAAGCTATTGGTGAGATTAAGCCTCCTGGTGTTGAG GTTCATTTCATCGTTGCAGCCTGTGAAAATATGATTAGTGGAACCGGAATG
genomic: TTCTTGGCGCTGCGAAAGCTATTGGTGAGATTAAGCCTCCTGGTGTTGAGgttagtttct ... ccacaaccagGTTCATTTCATCGTTGCAGCCTGTGAAAATATGATTAGTGGAACCGGAATG
ttttgaaagctatagtttgttaaccgaactgaacagattcgtcttccacaaccagGTTCATTTCATCGTTGCAGCCTGTGAAAATATGATTAGTGGAACCGGAATGAGACCTGGAGATGTCATCACTGCCTCAAACGGAAAGACCATTGAG
tgttaac putative branch site (score: 2)
ttcgtcttcc putative PPT
tatagttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtttctcccatcagattcttttgaaagctatagtttgttaaccgaactgaacagattcgtcttccacaaccagGTTCATTTCATCGTTGCAGCCTGTGAAAATATGATTAGTGGAACCGGAATGAGACCTGGAGATGTCATCACTGCCTCAAACGGAAAGACCATTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG