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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttataacaatcataagttatactcaaaacacttaaaagtgttaacctacacttgtagattttatggtatgactaacttttgggtggtttgttcttaatgtttcagGTTTTCAATGAAGTAAGCTCGCGGGAGATGGAAGAGATCGATGTTTTCAAAGGCATACTCGACAACTATGTTTTCGTGGTTGTTATTGGTGCAACAGTTT

Basic information

species Arabidopsis thaliana
transcript AT2G22950.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G22950.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: Vv07s0129g00110.t01 (Vitis vinifera), 3'ss of exon 5
gtaatttataacaatcataagttatactcaaaacacttaaaagtgttaacctacacttgtagattttatg-gtatgactaacttttgggtggtttgtt--cttaatgtttcagGTTTTCAATGAAGTAAGCTCGCGGGAGATGGAAGAGATCGATGTTTTCAAAGGCATACTCGACAACTATGTTTTCGTGGTTGTTATTGGTGCAACAGTTT
         |||  |  | || | | ||      | |  | |      | ||    |||||    |  || | |   ||||||| ||    |  |  |  ||||||  | ||||||||||||||  ||||||| || || |||||  | ||| |||| |||||||||||||| || |||||||| || |  | |||| |   | | || ||  
--------aaactcttctgagatgtcctttcttaattcgagat-----atctcagtttgtaaccctgttgaggacatctaacttatgaaaaggatcatggcttaattctgcagGTTTTCAATGAGATAAGCTCCCGAGAAATGGAGAAAATCAATGTATTCAAAGGCATACTGGATAACTATGTATTTGCTGCTGTTCTCACTTCCACTGTCC

upper sequence: AT2G22950.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: Vv07s0129g00180.t01 (Vitis vinifera), 3'ss of exon 6
gtaatttataacaatcataagttatactcaaaacacttaaaagtgttaacctacacttgtagattttatg-gtatgactaacttttgggtggtttgtt--cttaatgtttcagGTTTTCAATGAAGTAAGCTCGCGGGAGATGGAAGAGATCGATGTTTTCAAAGGCATACTCGACAACTATGTTTTCGTGGTTGTTATTGGTGCAACAGTTT
         |||  |  | || | | ||      | | || |      | ||    |||||    |  || | |   ||||||| ||    |  |  |  ||||||  | ||||||||||||||  ||||||| || || |||||  | ||| |||| |||||||||||||| || |||||||| || |  | |||| |   | | || ||  
--------aaactcttctgagatgtcctttcttaattcaagat-----atctcagtttgtaaccctgttgaggacatctaacttatgaaaaggatcatggcttaattctgcagGTTTTCAATGAGATAAGCTCCCGAGAAATGGAGAAAATCAATGTATTCAAAGGCATACTGGATAACTATGTATTTGCTGCTGTTCTCACTTCCACCGTCC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgtagattttatggtatgactaacttttgggtggtttgttcttaatgtttcagGTTTTCAATGAAGTAAGCTCGCGGGAGATGGAAGAGATCGATGTTTTCAAAGGCATACTCGACAACTATGTTTTCGTGGTTGTTATTGGTGCAACAGTTT
     agattttat  TA-rich tract