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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtattccgttagttagttaccaagaaactcgagattggtgagtttttttttttcatgtttgaatctattctctttcagGGGAAGTTTCACTCTTTCCACCCGGTAGCTACCATACTCAGTTACCTCACAAAGGCACCTCTTGTACCGCCCGGAACACCGGTGGTTAACGCTCTGTCGA

Basic information

species Arabidopsis thaliana
transcript AT2G22240.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G22240.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA08G14670.2 (Glycine max), 3'ss of exon 8
gtttgtattccgttagttagttaccaag--aaactcgagattggtgagtttttttttttcatgttt-----gaatctatt-ctctttcagGGGAAGTTTCACTCTTTCCACCCGGTAGCTACCATACTCAGTTACCTCACAAAGGCACCTCTTGTACCGCCCGGAACACCGGTGGTTAACGCTCTGTCGA
|||||   |  |||  |||   |   |    |||      ||  |   |||  |||||| | |  |     || | |||  || |  ||||| ||||| ||||| |||||||| || || ||||| ||||||||||| || ||||| |||||                                      
gtttgccatatgttgcttaaccattcattccaacctctatttcttatctttagttttttaaagactcaaatgagtttatggctttaacagGGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTG-------------------------------------

upper sequence: AT2G22240.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA08G14670.1 (Glycine max), 3'ss of exon 8
gtttgtattccgttagttagttaccaaga--aactcgagattggtgagtttttttttttcatgttt-----gaatctatt-ctctttcagGGGAAGTTTCACTCTTTCCACCCGGTAGCTACCATACTCAGTTACCTCACAAAGGCACCTCTTGTACCGCCCGGAACACCGGTGGTTAACGCTCTGTCGA
|||||   |  |||  |||   |   |    |||      ||  |   |||  |||||| | |  |     || | |||  || |  ||||| ||||| ||||| |||||||| || || ||||| ||||||||||| || ||||| ||||| |||            | | |   |||   |     ||
gtttgccatatgttgcttaaccattcattccaacctctatttcttatctttagttttttaaagactcaaatgagtttatggctttaacagGGAAAGTTCCACTCATTCCACCCAGTTGCGACCATCCTCAGTTACCTGACCAAGGCCCCTCTGGTAAGTATAATGTATCTGATTCATAATTGTTCAGTGA

upper sequence: AT2G22240.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: Vv07s0031g00920.t01 (Vitis vinifera), 3'ss of exon 8
gtttgtattccgttagttagttaccaagaaactcgagattggtgagtttttttttttcatgtt-tgaatc------tattc--tctttcagGGGAAGTTTCACTCTTTCCACCCGGTAGCTACCATACTCAGTTACCTCACAAAGGCACCTCTTGTACCGCCCGGAACACCGGTGGTTAACGCTCTGTCGA
|| ||| |||   |   |  |||    ||  |||  | ||  ||  ||||    |  ||||   ||| ||      | |||  | || ||||  |||||||| || |||||||| || || ||||| |||||||||||||| ||||| |||||                                      
gtctgttttcttctgcatccttat-gggaccctcttgctt--tggtttttaccatcacatggaatgattcataggatgttcaattttgcagGACAAGTTTCATTCCTTCCACCCAGTTGCCACCATCCTCAGTTACCTCACCAAGGCCCCTCTG-------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164125201|gb|ES085999.1|ES085999
EST:     TCCTTCTCGCTGAACTCAGCACCAGAATCCAGTTTAAAGCTGAAGGAGAG                         GGGAA-TTTCACTCTTTCCACCCGGTAGCTACCATACTCAGTTACCTC
genomic: TCCTTCTCGCTGAACTCAGCACCAGAATCCAATTTAAAGCTGAAGGAGAGgtttgtattc ... tctctttcagGGGAAGTTTCACTCTTTCCACCCGGTAGCTACCATACTCAGTTACCTC
EST: gi|164014546|gb|ES157540.1|ES157540
EST:     CTCGCTGAACTCAGCACCAGAATCCAGTTTAAAGCTGAAGGAGAG                         GGGAAGTTTCACTCTTTCCACCCGGTAGCTACCATACTCAGTTACCTCACA
genomic: CTCGCTGAACTCAGCACCAGAATCCAATTTAAAGCTGAAGGAGAGgtttgtattc ... tctctttcagGGGAAGTTTCACTCTTTCCACCCGGTAGCTACCATACTCAGTTACCTCACA
EST: gi|164206078|gb|ES170613.1|ES170613
EST:     CTCGCTGAACTCAGCACCTAGAATCCAGTTTAAAGCTGAAGGAGAG                         GGGAAGTTTCACTCTTTCCACCCGGTAGCTACCATACTCAGTTACCTCACA
genomic: CTCGCTGAACTCAGCACC-AGAATCCAATTTAAAGCTGAAGGAGAGgtttgtattc ... tctctttcagGGGAAGTTTCACTCTTTCCACCCGGTAGCTACCATACTCAGTTACCTCACA
EST: gi|164122078|gb|EL987080.1|EL987080
EST:     CTGAAGGAGAG                         GGGAAGTTTCACTCTTTCCACCCGGTAGCTACCATACTCAGTTACCTCACA
genomic: CTGAAGGAGAGgtttgtattc ... tctctttcagGGGAAGTTTCACTCTTTCCACCCGGTAGCTACCATACTCAGTTACCTCACA
EST: gi|164228430|gb|EL989803.1|EL989803
EST:     CTGAAGGAGAG                         GGGAAGGTTTCACTCTTTCCACCCGGTAGCTACCATACTCAGTTACCTCAC
genomic: CTGAAGGAGAGgtttgtattc ... tctctttcagGGGAA-GTTTCACTCTTTCCACCCGGTAGCTACCATACTCAGTTACCTCAC
EST: gi|164008166|gb|ES028634.1|ES028634
EST:     TCCTTCTCGCTGAACTCAGCACCAGAATCCAGTTTAAAGCTGAAGGAGAG                         GGGAAGTTTCACTCTTTCCACCCGG
genomic: TCCTTCTCGCTGAACTCAGCACCAGAATCCAATTTAAAGCTGAAGGAGAGgtttgtattc ... tctctttcagGGGAAGTTTCACTCTTTCCACCCGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaactcgagattggtgagtttttttttttcatgtttgaatctattctctttcagGGGAAGTTTCACTCTTTCCACCCGGTAGCTACCATACTCAGTTACCTCACAAAGGCACCTCTTGTACCGCCCGGAACACCGGTGGTTAACGCTCTGTCGA
                                        tctattctctttc  CT-rich tract
                   tttttttttttcatgt  TA-rich tract