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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgaaccttgacccacccttatttgatctgttctatcgaaagctgcacgtttttttgtttttgcttatgttcaaaatggtctgcacttttttatagCGAGTTGCCTGAGTTCTTGGGAGGTGCATGTACTTGCGCAGATCAAGGCGGTTGCATGCTTTCTGACAAGGGACCTTGGAAAAACCCGGAAATTGTGAAG

Basic information

species Arabidopsis thaliana
transcript AT2G21520.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124788946|gb|EH878625.1|EH878625
EST:     TTGAAGTCATTGATGTCAA                         CGAGTTGCCTGAGTTCTTGGGAGGTGCATGTACTTGCGCAGATCAAGGCGG
genomic: TTGAAGTCATTGATGTCAAgtatgtgaac ... ttttttatagCGAGTTGCCTGAGTTCTTGGGAGGTGCATGTACTTGCGCAGATCAAGGCGG
EST: gi|124977678|gb|EL050972.1|EL050972
EST:     CAAATTGCTTGAAGTCATTGATGTCAA                         CGAGTTGCCTGAGTTCTTGGGAGGTGCATGTACTTGCGCAGATCAAGGCGG
genomic: CAAATTGCTTGAAGTCATTGATGTCAAgtatgtgaac ... ttttttatagCGAGTTGCCTGAGTTCTTGGGAGGTGCATGTACTTGCGCAGATCAAGGCGG
EST: gi|86064746|gb|DR360503.1|DR360503
EST:     GTACTCGGATACAAGTATCTAAGCAAATTGCTTGAAGGCATTGATGTCAA                         CGAGTTGCCTGAGTTCTTGGGAGGTGCATGTACTTGCGCAGATCAAGGCGG
genomic: GTACTCGGATACAAGTATCTAAGCAAATTGCTTGAAGTCATTGATGTCAAgtatgtgaac ... ttttttatagCGAGTTGCCTGAGTTCTTGGGAGGTGCATGTACTTGCGCAGATCAAGGCGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctgcacgtttttttgtttttgcttatgttcaaaatggtctgcacttttttatagCGAGTTGCCTGAGTTCTTGGGAGGTGCATGTACTTGCGCAGATCAAGGCGGTTGCATGCTTTCTGACAAGGGACCTTGGAAAAACCCGGAAATTGTGAAG
                                          cactttttt  CT-rich tract
        tttttttgttttt  TA-rich tract