1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagaatctaatataatgaattgattgttgtcgagttttgacttttcgcatttgattatgtaattatgtatttttgactttttgtgtatatatattataaatggaacagTCAAAAGAGAGCGTGGATGCAGCCATAGGAGATGTATTGACGAGGCCATGGCTGCCACTTCCGTTGGGATTAAATCCGCCGGCTGTTGACGGTGTTATGA
species | Arabidopsis thaliana |
transcript | AT2G20570.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AACCAAATCTTGGATTTGGTGGTGCTCGTCCTCCGGTAGACTTACATCCG TCAAAAGAGAGCGTGGATGCAGCCATAGGAGATGTATTGACGAGGCCATGGEST: gi|116481675|gb|EG524267.1|EG524267
genomic: AACCAAATCTTGGATTTGGTGGTGCTCGTCCTCCGGTAGACTTACATCCGgtaagaatct ... aatggaacagTCAAAAGAGAGCGTGGATGCAGCCATAGGAGATGTATTGACGAGGCCATGG
EST: AACCAAATCTTGGATTTGGTGGTGCTCGTCCTCCGGTAGACTTACATCCG TCAAAAGAGAGCGTGGATGCAGCCATAGGAGATGTATTGACGAGGCCATGGEST: gi|124812466|gb|EH897332.1|EH897332
genomic: AACCAAATCTTGGATTTGGTGGTGCTCGTCCTCCGGTAGACTTACATCCGgtaagaatct ... aatggaacagTCAAAAGAGAGCGTGGATGCAGCCATAGGAGATGTATTGACGAGGCCATGG
EST: CTCGTCCTCCGGTAGACTTACATCCG TCAAAAGAGAGCGTGGATGCAGCCATAGGAGATGTATTGACGAGGCCATGGEST: gi|125270251|gb|EL284336.1|EL284336
genomic: CTCGTCCTCCGGTAGACTTACATCCGgtaagaatct ... aatggaacagTCAAAAGAGAGCGTGGATGCAGCCATAGGAGATGTATTGACGAGGCCATGG
EST: AACCAAATCTTGGATTTGGTGGTGCTCGTCCTCCGGTAGACTTACATCCG TCAAAAGAGAGCGTGGAEST: gi|116481664|gb|EG524256.1|EG524256
genomic: AACCAAATCTTGGATTTGGTGGTGCTCGTCCTCCGGTAGACTTACATCCGgtaagaatct ... aatggaacagTCAAAAGAGAGCGTGGA
EST: AACCAAATCTTGGATTTGGTGGTGCTCGTCCTCCGGTAGACTTACATCCG TCAAAAGAGAGCGTGGATGCAGCCATAGGAGATGTATTGACGAGGCCATGG
genomic: AACCAAATCTTGGATTTGGTGGTGCTCGTCCTCCGGTAGACTTACATCCGgtaagaatct ... aatggaacagTCAAAAGAGAGCGTGGATGCAGCCATAGGAGATGTATTGACGAGGCCATGG
attatgtaattatgtatttttgactttttgtgtatatatattataaatggaacagTCAAAAGAGAGCGTGGATGCAGCCATAGGAGATGTATTGACGAGGCCATGGCTGCCACTTCCGTTGGGATTAAATCCGCCGGCTGTTGACGGTGTTATGA
ttttgac putative branch site (score: 3)
taattatgtatttttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaatctaatataatgaattgattgttgtcgagttttgacttttcgcatttgattatgtaattatgtatttttgactttttgtgtatatatattataaatggaacagTCAAAAGAGAGCGTGGATGCAGCCATAGGAGATGTATTGACGAGGCCATGGCTGCCACTTCCGTTGGGATTAAATCCGCCGGCTGTTGACGGTGTTATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT