1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgtgaaaagtgtttctctcttttctagcattttaaaaaccggagattgtgttaaagcttgcttttttttttcttttttgttgtgaactattttaaagcttgctaactgatgtttctgcatgggtttatgtagGGAGAAGCCAAGAGTGCTCAGCTCATTGGTCAAGCAATCGCAAACAACCAAGCGTTCTTAACACTGAGGAAGATCGAAGCAGCTAGAGAGATCGCACAGA
species | Arabidopsis thaliana |
transcript | AT2G20530.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTGTCGAGAAAGCTGAACAGGACAAGAGAAGTGCTGTTATCCGCGCCGAG GGTGAAGCCAAGAGTGCTCAGCTCATTGGTCAAGCEST: gi|86075231|gb|DR370988.1|DR370988
genomic: TTGTCGAGAAAGCTGAACAGGACAAGAGAAGTGCTGTTATCCGCGCCGAGgtgtgaaaag ... gtttatgtagGGAGAAGCCAAGAGTGCTCAGCTCATTGGTCAAGC
EST: TTGTCGAGAAAGCTGAACAGGACAAGAGAAGTGCTGTTATCCGCGCCGAG GGAGAAGCCAAGAGTGCTCAGCTCATTGGTCAAGCAATCGCAAACAACCAAEST: gi|86075189|gb|DR370946.1|DR370946
genomic: TTGTCGAGAAAGCTGAACAGGACAAGAGAAGTGCTGTTATCCGCGCCGAGgtgtgaaaag ... gtttatgtagGGAGAAGCCAAGAGTGCTCAGCTCATTGGTCAAGCAATCGCAAACAACCAA
EST: TTGTCGAGAAAGCTGAACAGGACAAGAGAAGTGCTGTTATCCGCGCCGAG GGAGAAGCCAAGAGTGCTCAGCTCATTGGTCAAGCAATCGCAAACAACCAA
genomic: TTGTCGAGAAAGCTGAACAGGACAAGAGAAGTGCTGTTATCCGCGCCGAGgtgtgaaaag ... gtttatgtagGGAGAAGCCAAGAGTGCTCAGCTCATTGGTCAAGCAATCGCAAACAACCAA
tgttgtgaactattttaaagcttgctaactgatgtttctgcatgggtttatgtagGGAGAAGCCAAGAGTGCTCAGCTCATTGGTCAAGCAATCGCAAACAACCAAGCGTTCTTAACACTGAGGAAGATCGAAGCAGCTAGAGAGATCGCACAGA
tgaactattttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgaaaagtgtttctctcttttctagcattttaaaaaccggagattgtgttaaagcttgcttttttttttcttttttgttgtgaactattttaaagcttgctaactgatgtttctgcatgggtttatgtagGGAGAAGCCAAGAGTGCTCAGCTCATTGGTCAAGCAATCGCAAACAACCAAGCGTTCTTAACACTGAGGAAGATCGAAGCAGCTAGAGAGATCGCACAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC